WormBase Tree Display for Gene: WBGene00016294
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| WBGene00016294 | SMap | S_parent | Sequence | C31H2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C31H2.4 | |||||||
| Molecular_name | C31H2.4 | ||||||||
| C31H2.4.1 | |||||||||
| CE04132 | |||||||||
| Other_name | CELE_C31H2.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | C31H2.4 | ||||||||
| DB_info | Database | AceView | gene | XF772 | |||||
| WormQTL | gene | WBGene00016294 | |||||||
| WormFlux | gene | WBGene00016294 | |||||||
| NDB | locus_tag | CELE_C31H2.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016294|UniProtKB=Q18347 | |||||||
| family | PTHR11959 | ||||||||
| NCBI | gene | 183101 | |||||||
| RefSeq | protein | NM_076474.3 | |||||||
| SwissProt | UniProtAcc | Q18347 | |||||||
| TREEFAM | TREEFAM_ID | TF300622 | |||||||
| UniProt_GCRP | UniProtAcc | Q18347 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (68) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00061002 | ||||||||
| 00061003 | |||||||||
| 00061004 | |||||||||
| 00061005 | |||||||||
| 00061006 | |||||||||
| 00121946 | |||||||||
| 00121947 | |||||||||
| 00121948 | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00001993 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | C31H2.4 encodes a possible 4-hydroxyphenylpyruvate dioxygenase, orthologous to human HPDL/GLOXD1, and paralogous to HPD-1 and human HPD (OMIM:609695, mutated in tyrosinemia type III); C31H2.4 has no obvious function in mass RNAi experiments. | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 02 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable 4-hydroxyphenylpyruvate dioxygenase activity. Predicted to be involved in tyrosine catabolic process. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C31H2.4 | |||||||
| Corresponding_transcript | C31H2.4.1 | ||||||||
| Other_sequence | Dviv_isotig25954 | ||||||||
| EX008330.1 | |||||||||
| BMC10287_1 | |||||||||
| Oden_isotig13764 | |||||||||
| HGC05999_1 | |||||||||
| HBC04905_1 | |||||||||
| Tcol_isotig17594 | |||||||||
| Oden_isotig13763 | |||||||||
| Associated_feature | WBsf653959 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00011454 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00041632 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015827 | ||||||||
| Expr1036969 | |||||||||
| Expr1145656 | |||||||||
| Expr2001289 | |||||||||
| Expr2019512 | |||||||||
| Drives_construct | WBCnstr00028183 | ||||||||
| Construct_product | WBCnstr00028183 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (169) | |||||||||
| Interaction | WBInteraction000139962 | ||||||||
| WBInteraction000382001 | |||||||||
| WBInteraction000418091 | |||||||||
| WBInteraction000418092 | |||||||||
| WBInteraction000579536 | |||||||||
| Map_info | Positive | Positive_clone | C31H2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | -6.14162 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065140 | |||||||||
| WBPaper00065199 | |||||||||
| Method | Gene |
