WormBase Tree Display for Gene: WBGene00016195
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| WBGene00016195 | SMap | S_parent | Sequence | C28H8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | erd-2.2 | Person_evidence | WBPerson261 | |||||
| Sequence_name | C28H8.4 | ||||||||
| Molecular_name | C28H8.4 | ||||||||
| C28H8.4.1 | |||||||||
| CE01826 | |||||||||
| C28H8.4.2 | |||||||||
| Other_name | CELE_C28H8.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | erd-2.2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 Nov 2018 17:05:58 | WBPerson1983 | Name_change | CGC_name | erd-2.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | erd | ||||||||
| Allele (21) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00054092 | ||||||||
| 00054093 | |||||||||
| 00054094 | |||||||||
| 00054095 | |||||||||
| 00054096 | |||||||||
| 00121876 | |||||||||
| 00121877 | |||||||||
| 00121878 | |||||||||
| Contained_in_operon | CEOP3350 | ||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00001331 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable ER retention sequence binding activity. Predicted to be involved in protein retention in ER lumen; protein transport; and vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 21. Is an ortholog of human KDELR2 (KDEL endoplasmic reticulum protein retention receptor 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112201 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6305) | ||||
| Molecular_info | Corresponding_CDS | C28H8.4 | |||||||
| Corresponding_transcript | C28H8.4.1 | ||||||||
| C28H8.4.2 | |||||||||
| Other_sequence (75) | |||||||||
| Associated_feature | WBsf654964 | ||||||||
| WBsf659006 | |||||||||
| WBsf992572 | |||||||||
| WBsf1014980 | |||||||||
| WBsf225021 | |||||||||
| WBsf225022 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00090896 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029303 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086440 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011313 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086443 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117190 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086442 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117189 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005473 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041430 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010781 | ||||||||
| Expr1036931 | |||||||||
| Expr1145460 | |||||||||
| Expr2001206 | |||||||||
| Expr2019428 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (87) | |||||||||
| Interaction | WBInteraction000134871 | ||||||||
| WBInteraction000159746 | |||||||||
| WBInteraction000160430 | |||||||||
| WBInteraction000163045 | |||||||||
| WBInteraction000168389 | |||||||||
| WBInteraction000168835 | |||||||||
| WBInteraction000211274 | |||||||||
| WBInteraction000217810 | |||||||||
| WBInteraction000223995 | |||||||||
| WBInteraction000238545 | |||||||||
| WBInteraction000246145 | |||||||||
| WBInteraction000247473 | |||||||||
| WBInteraction000261357 | |||||||||
| WBInteraction000271514 | |||||||||
| WBInteraction000302827 | |||||||||
| WBInteraction000325309 | |||||||||
| WBInteraction000326934 | |||||||||
| WBInteraction000328941 | |||||||||
| WBInteraction000332587 | |||||||||
| WBInteraction000357361 | |||||||||
| WBInteraction000367549 | |||||||||
| WBInteraction000372031 | |||||||||
| WBInteraction000373768 | |||||||||
| WBInteraction000396338 | |||||||||
| WBInteraction000396473 | |||||||||
| WBInteraction000406586 | |||||||||
| WBInteraction000411443 | |||||||||
| WBInteraction000416264 | |||||||||
| WBInteraction000428033 | |||||||||
| WBInteraction000430985 | |||||||||
| WBInteraction000433385 | |||||||||
| WBInteraction000435427 | |||||||||
| WBInteraction000440672 | |||||||||
| WBInteraction000463733 | |||||||||
| WBInteraction000466376 | |||||||||
| WBInteraction000466862 | |||||||||
| WBInteraction000474971 | |||||||||
| WBInteraction000500780 | |||||||||
| WBInteraction000500781 | |||||||||
| Map_info | Map | III | Position | -1.43584 | |||||
| Positive | Positive_clone | C28H8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028381 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058518 | |||||||||
| WBPaper00061353 | |||||||||
| WBPaper00064375 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
