WormBase Tree Display for Gene: WBGene00016173
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| WBGene00016173 | SMap | S_parent | Sequence | C27H5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fust-1 | Person_evidence | WBPerson1352 | |||||
| Sequence_name | C27H5.3 | ||||||||
| Molecular_name | C27H5.3a | ||||||||
| C27H5.3a.1 | |||||||||
| CE27099 | |||||||||
| C27H5.3b | |||||||||
| CE51847 | |||||||||
| C27H5.3b.1 | |||||||||
| C27H5.3b.2 | |||||||||
| Other_name | CELE_C27H5.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | fust-1 | ||||||||
| DB_info | Database | AceView | gene | 2H445 | |||||
| WormQTL | gene | WBGene00016173 | |||||||
| WormFlux | gene | WBGene00016173 | |||||||
| NDB | locus_tag | CELE_C27H5.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016173|UniProtKB=Q18265 | |||||||
| family | PTHR23238 | ||||||||
| NCBI | gene | 174175 | |||||||
| RefSeq | protein | NM_063082.7 | |||||||
| NM_001381492.1 | |||||||||
| TrEMBL | UniProtAcc | Q18265 | |||||||
| A0A1N7SYQ6 | |||||||||
| UniProt_GCRP | UniProtAcc | Q18265 | |||||||
| OMIM | gene | 133450 | |||||||
| 137070 | |||||||||
| 601574 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 Aug 2010 10:05:58 | WBPerson2970 | Name_change | CGC_name | fust-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fust | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00001567 | ||||||||
| WBStrain00047288 | |||||||||
| WBStrain00047287 | |||||||||
| WBStrain00047289 | |||||||||
| WBStrain00050865 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (47) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in gonad; head; intestinal cell; neurons; and tail. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 6; connective tissue cancer (multiple); and essential tremor 4. Is an ortholog of human FUS (FUS RNA binding protein). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:1289 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4010) | ||||
| DOID:0111431 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4010) | ||||||
| DOID:0060198 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4010) | ||||||
| DOID:4549 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11547) | ||||||
| DOID:1115 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4010) | ||||||
| DOID:332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4010) | ||||||
| DOID:3382 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4010) | ||||||
| DOID:3371 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11547) | ||||||
| DOID:3369 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3508) | ||||||
| Molecular_info | Corresponding_CDS | C27H5.3a | |||||||
| C27H5.3b | |||||||||
| Corresponding_transcript | C27H5.3a.1 | ||||||||
| C27H5.3b.1 | |||||||||
| C27H5.3b.2 | |||||||||
| Other_sequence (37) | |||||||||
| Associated_feature | WBsf644354 | ||||||||
| WBsf988367 | |||||||||
| WBsf221563 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00090580 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011275 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00083277 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076171 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041374 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00002407 | ||||||||
| WBCnstr00028273 | |||||||||
| WBCnstr00042661 | |||||||||
| WBCnstr00042662 | |||||||||
| WBCnstr00042663 | |||||||||
| Construct_product | WBCnstr00028273 | ||||||||
| WBCnstr00042661 | |||||||||
| WBCnstr00042662 | |||||||||
| WBCnstr00042663 | |||||||||
| Regulate_expr_cluster | WBPaper00066004:fust-1(csb21)_downregulated | ||||||||
| WBPaper00066004:fust-1(csb21)_upregulated | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (109) | |||||||||
| Interaction (197) | |||||||||
| Map_info | Map | II | Position | 0.496031 | Error | 0.000218 | |||
| Positive | Positive_clone | C27H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00039140 | |||||||||
| WBPaper00043234 | |||||||||
| WBPaper00046432 | |||||||||
| WBPaper00052702 | |||||||||
| WBPaper00053121 | |||||||||
| WBPaper00053757 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058116 | |||||||||
| WBPaper00062110 | |||||||||
| WBPaper00063415 | |||||||||
| WBPaper00063450 | |||||||||
| WBPaper00064663 | |||||||||
| WBPaper00066004 | |||||||||
| WBPaper00066342 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
