WormBase Tree Display for Gene: WBGene00016029

WBGene00016029 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 2
    Name: CGC_name: elf-1 Person_evidence: WBPerson260
      Sequence_name: C24A1.2
      Molecular_name: C24A1.2a
        C24A1.2a.1
        CE27722
        C24A1.2b
        CE38587
        C24A1.2b.1
      Other_name: W02B3.g Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_C24A1.2 Accession_evidence: NDB BX284603
      Public_name: elf-1
    DB_info: Database: WormQTL gene WBGene00016029
        WormFlux gene WBGene00016029
        NDB locus_tag CELE_C24A1.2
        Panther gene CAEEL|WormBase=WBGene00016029|UniProtKB=H2KYY1
          family PTHR11849
        NCBI gene 175226
        RefSeq protein NM_001026010.5
            NM_001026009.3
        TrEMBL UniProtAcc Q400M2
            H2KYY1
        UniProt_GCRP UniProtAcc H2KYY1
        OMIM gene 300775
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 08 Nov 2011 16:15:59 WBPerson2970 Name_change: CGC_name: elf-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: elf
    Allele (678)
    Strain: WBStrain00029508
    RNASeq_FPKM (74)
    GO_annotation (14)
    Ortholog: WBGene00035562 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00158116 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00064851 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00136778 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00222591 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5917 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12729 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5163 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g11289 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22655 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g17588 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6687 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g2667 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g4045 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6874 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00027.g1619 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-elf-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g16651 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_06140.g36130 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19070 Caenorhabditis latens From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09509 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g5616 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30329100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g6804 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00244573 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00091337 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263352 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00302708 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0000567 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      ZFIN:ZDB-GENE-980526-335 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-031215-1 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-040822-41 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:3316 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      HGNC:3317 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      HGNC:3319 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      MGI:107180 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      MGI:1928377 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      MGI:1916507 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      RGD:620697 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      RGD:1560743 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      RGD:1310585 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
    Paralog (11)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in gonad development and regulation of cell division. Predicted to be located in nucleus. Expressed in head neurons and pharynx. Is an ortholog of human ELF1 (E74 like ETS transcription factor 1); ELF2 (E74 like ETS transcription factor 2); and ELF4 (E74 like ETS transcription factor 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: EFO:MONDO:0031384 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:3319)
  Molecular_info: Corresponding_CDS: C24A1.2a
      C24A1.2b
    Corresponding_CDS_history: C24A1.2:wp143
    Corresponding_transcript: C24A1.2a.1
      C24A1.2b.1
    Other_sequence (13)
    Associated_feature (29)
    Transcription_factor: WBTranscriptionFactor000693
  Experimental_info: RNAi_result: WBRNAi00041041 Inferred_automatically: RNAi_primary
      WBRNAi00006657 Inferred_automatically: RNAi_primary
      WBRNAi00029125 Inferred_automatically: RNAi_primary
      WBRNAi00107182 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7441
      Expr1019693
      Expr1036851
      Expr1145081
      Expr2011273
      Expr2029509
    Drives_construct: WBCnstr00012585
    Microarray_results (30)
    Expression_cluster (164)
    Interaction (31)
  Map_info: Map: III Position: -26.2701
    Positive: Positive_clone: C24A1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00032994
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene