WormBase Tree Display for Gene: WBGene00016029
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WBGene00016029 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | elf-1 | Person_evidence | WBPerson260 | |||||
Sequence_name | C24A1.2 | ||||||||
Molecular_name | C24A1.2a | ||||||||
C24A1.2a.1 | |||||||||
CE27722 | |||||||||
C24A1.2b | |||||||||
CE38587 | |||||||||
C24A1.2b.1 | |||||||||
Other_name | W02B3.g | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_C24A1.2 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | elf-1 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00016029 | |||||
WormFlux | gene | WBGene00016029 | |||||||
NDB | locus_tag | CELE_C24A1.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00016029|UniProtKB=H2KYY1 | |||||||
family | PTHR11849 | ||||||||
NCBI | gene | 175226 | |||||||
RefSeq | protein | NM_001026010.5 | |||||||
NM_001026009.3 | |||||||||
TrEMBL | UniProtAcc | Q400M2 | |||||||
H2KYY1 | |||||||||
UniProt_GCRP | UniProtAcc | H2KYY1 | |||||||
OMIM | gene | 300775 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 08 Nov 2011 16:15:59 | WBPerson2970 | Name_change | CGC_name | elf-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | elf | ||||||||
Allele (678) | |||||||||
Strain | WBStrain00029508 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Ortholog (41) | |||||||||
Paralog (11) | |||||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in gonad development and regulation of cell division. Predicted to be located in nucleus. Expressed in head neurons and pharynx. Is an ortholog of human ELF1 (E74 like ETS transcription factor 1); ELF2 (E74 like ETS transcription factor 2); and ELF4 (E74 like ETS transcription factor 4). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | EFO:MONDO:0031384 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3319) | ||||
Molecular_info | Corresponding_CDS | C24A1.2a | |||||||
C24A1.2b | |||||||||
Corresponding_CDS_history | C24A1.2:wp143 | ||||||||
Corresponding_transcript | C24A1.2a.1 | ||||||||
C24A1.2b.1 | |||||||||
Other_sequence (13) | |||||||||
Associated_feature (29) | |||||||||
Transcription_factor | WBTranscriptionFactor000693 | ||||||||
Experimental_info | RNAi_result | WBRNAi00041041 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006657 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00029125 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00107182 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr7441 | ||||||||
Expr1019693 | |||||||||
Expr1036851 | |||||||||
Expr1145081 | |||||||||
Expr2011273 | |||||||||
Expr2029509 | |||||||||
Drives_construct | WBCnstr00012585 | ||||||||
Microarray_results | SMD_C24A1.2 | ||||||||
174325_at | |||||||||
174326_s_at | |||||||||
183542_at | |||||||||
A_12_P112127 | |||||||||
Aff_C24A1.2 | |||||||||
GPL13394_WBGene00016029 | |||||||||
GPL13914_C24A1.2 | |||||||||
GPL14144_C24A1.2a_1103-1162_0.916_12_C | |||||||||
GPL14144_C24A1.2a_886-945_0.933_8_B | |||||||||
GPL14144_C24A1.2a_992-1051_0.958_2_A | |||||||||
GPL19516_CGZ0005594 | |||||||||
GPL19516_CGZ0005595 | |||||||||
GPL19516_CGZ0005596 | |||||||||
GPL19516_CGZ0005597 | |||||||||
GPL19516_CGZ0005598 | |||||||||
GPL21109_C24A1.2a.1 | |||||||||
GPL21109_C24A1.2b.2 | |||||||||
GPL3518_CE27722 | |||||||||
GPL8304_CE_WBGene00016029_A | |||||||||
GPL8304_CE_WBGene00016029_B | |||||||||
GPL8304_CE_WBGene00016029_C | |||||||||
GPL8673_C24A1_2aP00055 | |||||||||
GPL8673_C24A1_2aP00528 | |||||||||
GPL8673_C24A1_2aP00712 | |||||||||
GPL8673_C24A1_2bP00117 | |||||||||
GPL8673_C24A1_2bP00525 | |||||||||
GPL8673_C24A1_2bP00709 | |||||||||
GPL9450_C24A1.2 | |||||||||
cea2.p.57980 | |||||||||
Expression_cluster (164) | |||||||||
Interaction (31) | |||||||||
Map_info | Map | III | Position | -26.2701 | |||||
Positive | Positive_clone | C24A1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027309 | ||||||||
WBPaper00032994 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |