WormBase Tree Display for Gene: WBGene00016002
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| WBGene00016002 | SMap | S_parent | Sequence | C18H9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | gyf-1 | Person_evidence | WBPerson37493 | |||||
| WBPerson3347 | |||||||||
| Sequence_name | C18H9.3 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | CELE_C18H9.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | gyf-1 | ||||||||
| DB_info | Database | AceView | gene | 2G981 | |||||
| WormQTL | gene | WBGene00016002 | |||||||
| WormFlux | gene | WBGene00016002 | |||||||
| NDB | locus_tag | CELE_C18H9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016002|UniProtKB=Q09237 | |||||||
| family | PTHR14445 | ||||||||
| NCBI | gene | 174103 | |||||||
| RefSeq | protein | NM_062959.3 | |||||||
| NM_001356866.2 | |||||||||
| NM_001356867.3 | |||||||||
| NM_001356864.3 | |||||||||
| NM_001356865.3 | |||||||||
| SwissProt | UniProtAcc | Q09237 | |||||||
| UniProt_GCRP | UniProtAcc | Q09237 | |||||||
| OMIM | gene | 612003 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 Oct 2012 11:22:29 | WBPerson1849 | Event | Acquires_merge | WBGene00016001 | ||||
| 3 | 20 May 2019 14:10:26 | WBPerson1983 | Name_change | CGC_name | gyf-1 | ||||
| Acquires_merge | WBGene00016001 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gyf | ||||||||
| Allele (107) | |||||||||
| Possibly_affected_by | WBVar02154077 | ||||||||
| Strain (11) | |||||||||
| Component_of_genotype | WBGenotype00000096 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00053011 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Automated_description | Predicted to be located in cytosol. Human ortholog(s) of this gene implicated in Parkinson's disease. Is an ortholog of human GIGYF2 (GRB10 interacting GYF protein 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:14330 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11960) | ||||
| Modifies_disease | DOID:332 | ||||||||
| DOID:9255 | |||||||||
| Modifies_disease_in_annotation | WBDOannot00001133 | ||||||||
| WBDOannot00001134 | |||||||||
| Molecular_info | Corresponding_CDS | C18H9.3a | |||||||
| C18H9.3b | |||||||||
| C18H9.3c | |||||||||
| C18H9.3d | |||||||||
| C18H9.3e | |||||||||
| Corresponding_CDS_history | C18H9.3:wp234 | ||||||||
| Corresponding_transcript | C18H9.3a.1 | ||||||||
| C18H9.3b.1 | |||||||||
| C18H9.3c.1 | |||||||||
| C18H9.3d.1 | |||||||||
| C18H9.3e.1 | |||||||||
| Other_sequence | CR03983 | ||||||||
| BMC01201_1 | |||||||||
| CRC11887_1 | |||||||||
| FG353905.1 | |||||||||
| FG348930.1 | |||||||||
| JI460444.1 | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040994 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00040993 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011039 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040992 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011038 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017817 | ||||||||
| Expr1028913 | |||||||||
| Expr1036834 | |||||||||
| Expr1145039 | |||||||||
| Expr1145040 | |||||||||
| Expr2001001 | |||||||||
| Expr2019219 | |||||||||
| Drives_construct | WBCnstr00028394 | ||||||||
| WBCnstr00042401 | |||||||||
| Construct_product | WBCnstr00028394 | ||||||||
| WBCnstr00042401 | |||||||||
| Regulate_expr_cluster | WBPaper00061199:GYF-1_interacting | ||||||||
| Antibody | WBAntibody00002949 | ||||||||
| Microarray_results (37) | |||||||||
| Expression_cluster (131) | |||||||||
| Interaction (53) | |||||||||
| Map_info | Map | II | Position | -0.03783 | |||||
| Positive | Positive_clone | C18H9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058215 | |||||||||
| WBPaper00061199 | |||||||||
| WBPaper00061615 | |||||||||
| WBPaper00061991 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
