WormBase Tree Display for Gene: WBGene00015941
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| WBGene00015941 | SMap | S_parent | Sequence | C18A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C18A3.3 | |||||||
| Molecular_name | C18A3.3 | ||||||||
| C18A3.3.1 | |||||||||
| CE28890 | |||||||||
| Other_name | CELE_C18A3.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | C18A3.3 | ||||||||
| DB_info | Database | AceView | gene | 2G7 | |||||
| WormQTL | gene | WBGene00015941 | |||||||
| WormFlux | gene | WBGene00015941 | |||||||
| NDB | locus_tag | CELE_C18A3.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015941|UniProtKB=Q09958 | |||||||
| family | PTHR13028 | ||||||||
| NCBI | gene | 173968 | |||||||
| RefSeq | protein | NM_062724.8 | |||||||
| SwissProt | UniProtAcc | Q09958 | |||||||
| TREEFAM | TREEFAM_ID | TF314642 | |||||||
| UniProt_GCRP | UniProtAcc | Q09958 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (38) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00055460 | ||||||||
| 00055461 | |||||||||
| 00055462 | |||||||||
| 00055463 | |||||||||
| 00055464 | |||||||||
| 00055465 | |||||||||
| 00055466 | |||||||||
| 00055467 | |||||||||
| 00055468 | |||||||||
| Contained_in_operon | CEOP2216 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in rRNA processing and ribosomal large subunit biogenesis. Predicted to be located in nuclear periphery and nucleolus. Predicted to be part of preribosome, large subunit precursor. Is an ortholog of human EBNA1BP2 (EBNA1 binding protein 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C18A3.3 | |||||||
| Corresponding_transcript | C18A3.3.1 | ||||||||
| Other_sequence (38) | |||||||||
| Associated_feature | WBsf657614 | ||||||||
| WBsf987935 | |||||||||
| WBsf1012252 | |||||||||
| WBsf221325 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1017629 | ||||||||
| Expr1036816 | |||||||||
| Expr1144929 | |||||||||
| Expr2000953 | |||||||||
| Expr2019175 | |||||||||
| Drives_construct | WBCnstr00028438 | ||||||||
| Construct_product | WBCnstr00028438 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (131) | |||||||||
| SAGE_tag | SAGE:ggttgagactcttgaag | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:gaagatcttttgtgatt | Strand | Antisense | |||||||
| SAGE:gaagatcttt | Strand | Antisense | |||||||
| SAGE:gtcttgatcaggatgat | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ggttgagact | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gtcttgatca | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tcttttcacg | Strand | Antisense | |||||||
| Interaction (196) | |||||||||
| Map_info | Positive | Positive_clone | C18A3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | -0.96229 | |||||||
| Reference | WBPaper00027610 | ||||||||
| WBPaper00028451 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065861 | |||||||||
| Method | Gene |
