WormBase Tree Display for Gene: WBGene00015915

WBGene00015915 SMap: S_parent: Sequence: C17G10
  Identity: Version: 1
    Name: Sequence_name: C17G10.1
      Molecular_name: C17G10.1
        C17G10.1.1
        CE01785
        C17G10.1.2
      Other_name: CELE_C17G10.1 Accession_evidence: NDB BX284602
      Public_name: C17G10.1
    DB_info: Database: AceView gene 2F887
        WormQTL gene WBGene00015915
        WormFlux gene WBGene00015915
        NDB locus_tag CELE_C17G10.1
        Panther gene CAEEL|WormBase=WBGene00015915|UniProtKB=Q09973
          family PTHR12117
        NCBI gene 173947
        RefSeq protein NM_062687.9
        TREEFAM TREEFAM_ID TF105920
        TrEMBL UniProtAcc Q09973
        UniProt_GCRP UniProtAcc Q09973
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (29)
    Strain: WBStrain00001914
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP2192
    Ortholog: WBGene00025502 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00057324 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00163243 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00111404 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00191141 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00209952 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00222533 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12577 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2463 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5460 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1549 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12291 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g11852 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11299 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21452 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1098 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g9194 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7100 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00121.g4947 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-C17G10.1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11364 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00331.g9556 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06098 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006076 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10968 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g2129 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20110800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4554 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00217456 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00248227 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00263079 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288733 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000851 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0265189 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-3294 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:25585 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2442978 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:1308848 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable peptidyl-proline dioxygenase activity. Predicted to be involved in regulation of translational termination. Predicted to be located in cytoplasm. Expressed in hypodermis. Is an ortholog of human OGFOD1 (2-oxoglutarate and iron dependent oxygenase domain containing 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C17G10.1
    Corresponding_transcript: C17G10.1.1
      C17G10.1.2
    Other_sequence (26)
    Associated_feature: WBsf221306
      WBsf221307
  Experimental_info: RNAi_result: WBRNAi00106375 Inferred_automatically: RNAi_primary
      WBRNAi00010928 Inferred_automatically: RNAi_primary
      WBRNAi00076145 Inferred_automatically: RNAi_primary
      WBRNAi00029020 Inferred_automatically: RNAi_primary
      WBRNAi00007800 Inferred_automatically: RNAi_primary
      WBRNAi00077897 Inferred_automatically: RNAi_primary
      WBRNAi00040835 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr2116
      Expr5288
      Expr1010358
      Expr1036804
      Expr1144879
      Expr2000926
      Expr2019147
    Drives_construct: WBCnstr00002703
      WBCnstr00028459
    Construct_product: WBCnstr00028459
    Microarray_results (21)
    Expression_cluster (124)
    Interaction (50)
  Map_info: Positive: Positive_clone: C17G10 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -1.06167
  Reference: WBPaper00038491
    WBPaper00055090
  Method: Gene