WormBase Tree Display for Gene: WBGene00015888
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| WBGene00015888 | SMap | S_parent | Sequence | C17C3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C17C3.2 | |||||||
| Molecular_name | C17C3.2 | ||||||||
| C17C3.2.1 | |||||||||
| CE03984 | |||||||||
| Other_name | CELE_C17C3.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | C17C3.2 | ||||||||
| DB_info | Database | AceView | gene | 2F855 | |||||
| WormFlux | gene | WBGene00015888 | |||||||
| NDB | locus_tag | CELE_C17C3.2 | |||||||
| NCBI | gene | 182713 | |||||||
| RefSeq | protein | NM_062672.3 | |||||||
| TREEFAM | TREEFAM_ID | TF322839 | |||||||
| TrEMBL | UniProtAcc | G5EBI7 | |||||||
| UniProt_GCRP | UniProtAcc | G5EBI7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01498435 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | chrII_pilon.g4543 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| chrII_pilon.g4544 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00019122 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00015895 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Is affected by rsr-2; dlc-1; and csr-1 based on tiling array and RNA-seq studies. Is affected by aldicarb; fluoranthene; and Sirolimus based on microarray studies. Is predicted to encode a protein with the following domain: Papain-like cysteine peptidase superfamily. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C17C3.2 | |||||||
| Corresponding_transcript | C17C3.2.1 | ||||||||
| Associated_feature | WBsf717669 | ||||||||
| WBsf221297 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00010901 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1144817 | ||||||||
| Drives_construct | WBCnstr00028482 | ||||||||
| Construct_product | WBCnstr00028482 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster | WBPaper00033070:Elbe_upregulated | ||||||||
| WBPaper00038061:aldicarb_downregulated | |||||||||
| WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray | |||||||||
| WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray | |||||||||
| WBPaper00055334:DLC-1_interacting | |||||||||
| WBPaper00061753:csr-1(tor159)_upregulated_25C | |||||||||
| WBPaper00036123:Fluoranthene_regulated | |||||||||
| WBPaper00048989:N2_rapamycin_downregulated | |||||||||
| Interaction | WBInteraction000289516 | ||||||||
| WBInteraction000302537 | |||||||||
| WBInteraction000327462 | |||||||||
| WBInteraction000425653 | |||||||||
| WBInteraction000439980 | |||||||||
| Map_info | Positive | Positive_clone | C17C3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | -1.11887 | |||||||
| Method | Gene |
