WormBase Tree Display for Gene: WBGene00015809
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| WBGene00015809 | SMap | S_parent | Sequence | C16A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | znf-622 | Person_evidence | WBPerson260 | |||||
| Sequence_name | C16A3.4 | ||||||||
| Molecular_name | C16A3.4 | ||||||||
| C16A3.4.1 | |||||||||
| CE04004 | |||||||||
| Other_name | CELE_C16A3.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | znf-622 | ||||||||
| DB_info | Database | AceView | gene | 3H473 | |||||
| WormQTL | gene | WBGene00015809 | |||||||
| WormFlux | gene | WBGene00015809 | |||||||
| NDB | locus_tag | CELE_C16A3.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015809|UniProtKB=Q18037 | |||||||
| family | PTHR13182 | ||||||||
| NCBI | gene | 175905 | |||||||
| RefSeq | protein | NM_065996.5 | |||||||
| TREEFAM | TREEFAM_ID | TF313094 | |||||||
| TrEMBL | UniProtAcc | Q18037 | |||||||
| UniProt_GCRP | UniProtAcc | Q18037 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 Jan 2021 23:29:51 | WBPerson1983 | Name_change | CGC_name | znf-622 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | znf | ||||||||
| Allele (15) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00060040 | ||||||||
| 00060041 | |||||||||
| 00060042 | |||||||||
| 00060043 | |||||||||
| 00060044 | |||||||||
| 00060045 | |||||||||
| 00121588 | |||||||||
| 00121589 | |||||||||
| Contained_in_operon | CEOP3364 | ||||||||
| Ortholog (37) | |||||||||
| Structured_description | Automated_description | Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, large subunit precursor. Is an ortholog of human ZNF622 (zinc finger protein 622). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C16A3.4 | |||||||
| Corresponding_transcript | C16A3.4.1 | ||||||||
| Other_sequence (19) | |||||||||
| Associated_feature | WBsf978343 | ||||||||
| WBsf225094 | |||||||||
| WBsf225095 | |||||||||
| Gene_product_binds (374) | |||||||||
| Transcription_factor | WBTranscriptionFactor000958 | ||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1013333 | ||||||||
| Expr1036767 | |||||||||
| Expr1144709 | |||||||||
| Expr1200116 | |||||||||
| Expr2000843 | |||||||||
| Expr2019060 | |||||||||
| Drives_construct | WBCnstr00028549 | ||||||||
| Construct_product | WBCnstr00016751 | ||||||||
| WBCnstr00028549 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (106) | |||||||||
| Interaction (163) | |||||||||
| Map_info | Map | III | Position | -1.31785 | |||||
| Positive | Positive_clone | C16A3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00023496 | ||||||||
| WBPaper00033654 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061738 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
