WormBase Tree Display for Gene: WBGene00015734
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| WBGene00015734 | SMap | S_parent | Sequence | C13B9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | copd-1 | Person_evidence | WBPerson3188 | |||||
| Sequence_name | C13B9.3 | ||||||||
| Molecular_name | C13B9.3 | ||||||||
| C13B9.3.1 | |||||||||
| CE01778 | |||||||||
| Other_name | phi-30 | Person_evidence | WBPerson2582 | ||||||
| CELE_C13B9.3 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | copd-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 Aug 2013 16:40:57 | WBPerson2970 | Name_change | CGC_name | copd-1 | ||||
| 3 | 08 Aug 2013 16:41:57 | WBPerson2970 | Name_change | CGC_name | copd-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | copd | ||||||||
| Allele (30) | |||||||||
| Strain | WBStrain00001556 | ||||||||
| WBStrain00002238 | |||||||||
| WBStrain00032746 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | C13B9.3 encodes a delta subunit of the coatomer (COPI) complex; in mass RNAi assays, C13B9.3 is required for fertility and general health. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| WBPaper00012764 | |||||||||
| WBPaper00012858 | |||||||||
| WBPaper00012863 | |||||||||
| WBPaper00012889 | |||||||||
| WBPaper00013106 | |||||||||
| WBPaper00013627 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in Golgi localization; endoplasmic reticulum to Golgi vesicle-mediated transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in COPI-coated vesicle membrane and Golgi membrane. Predicted to be part of COPI vesicle coat. Is an ortholog of human ARCN1 (archain 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C13B9.3 | |||||||
| Corresponding_transcript | C13B9.3.1 | ||||||||
| Other_sequence (88) | |||||||||
| Associated_feature | WBsf655443 | ||||||||
| WBsf667011 | |||||||||
| WBsf667012 | |||||||||
| WBsf667013 | |||||||||
| WBsf226857 | |||||||||
| WBsf226858 | |||||||||
| WBsf226859 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Chronogram90 | ||||||||
| Expr5248 | |||||||||
| Expr5249 | |||||||||
| Expr1023754 | |||||||||
| Expr1036730 | |||||||||
| Expr1144491 | |||||||||
| Expr2010458 | |||||||||
| Expr2028698 | |||||||||
| Drives_construct | WBCnstr00002396 | ||||||||
| WBCnstr00004328 | |||||||||
| WBCnstr00028611 | |||||||||
| Construct_product | WBCnstr00028611 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (120) | |||||||||
| Interaction (113) | |||||||||
| Map_info | Map | III | Position | -1.03249 | |||||
| Positive | Positive_clone | C13B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
