WormBase Tree Display for Gene: WBGene00015716
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| WBGene00015716 | SMap | S_parent | Sequence | C12D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sox-4 | Person_evidence | WBPerson260 | |||||
| Sequence_name | C12D12.5 | ||||||||
| Molecular_name | C12D12.5a | ||||||||
| C12D12.5a.1 | |||||||||
| CE45710 | |||||||||
| C12D12.5b | |||||||||
| CE51902 | |||||||||
| C12D12.5a.2 | |||||||||
| C12D12.5b.1 | |||||||||
| Other_name | CELE_C12D12.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | sox-4 | ||||||||
| DB_info | Database | AceView | gene | XE124 | |||||
| WormQTL | gene | WBGene00015716 | |||||||
| WormFlux | gene | WBGene00015716 | |||||||
| NDB | locus_tag | CELE_C12D12.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015716|UniProtKB=A0A1N7SZG1 | |||||||
| family | PTHR10270 | ||||||||
| NCBI | gene | 182547 | |||||||
| RefSeq | protein | NM_001392746.1 | |||||||
| NM_001348598.3 | |||||||||
| TrEMBL | UniProtAcc | A0A1N7SZG1 | |||||||
| Q17922 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A1N7SZG1 | |||||||
| OMIM | gene | 184430 | |||||||
| 480000 | |||||||||
| 600898 | |||||||||
| 601618 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 24 Jun 2009 10:44:19 | WBPerson9133 | Name_change | CGC_name | sox-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sox | ||||||||
| Allele (57) | |||||||||
| Strain | WBStrain00036679 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (54) | |||||||||
| Paralog | WBGene00004771 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004949 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004950 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001182 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001325 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in innate immune response. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in several diseases, including Coffin-Siris syndrome (multiple); gonadal dysgenesis (multiple); and hypotrichosis-lymphedema-telangiectasia syndrome. Is an ortholog of several human genes including SOX11 (SRY-box transcription factor 11); SOX15 (SRY-box transcription factor 15); and SOX4 (SRY-box transcription factor 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (11) | ||||||||
| Molecular_info | Corresponding_CDS | C12D12.5a | |||||||
| C12D12.5b | |||||||||
| Corresponding_CDS_history | C12D12.5:wp179 | ||||||||
| C12D12.5:wp223 | |||||||||
| Corresponding_transcript | C12D12.5a.1 | ||||||||
| C12D12.5a.2 | |||||||||
| C12D12.5b.1 | |||||||||
| Other_sequence | CRC03851_1 | ||||||||
| FD516554.1 | |||||||||
| CR03682 | |||||||||
| CSC01613_1 | |||||||||
| Associated_feature | WBsf653848 | ||||||||
| WBsf1004644 | |||||||||
| WBsf1004645 | |||||||||
| WBsf1004646 | |||||||||
| WBsf1022625 | |||||||||
| WBsf1022626 | |||||||||
| WBsf237184 | |||||||||
| WBsf237185 | |||||||||
| Transcription_factor | WBTranscriptionFactor000626 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00040379 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010639 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12605 | ||||||||
| Expr1029146 | |||||||||
| Expr1036728 | |||||||||
| Expr1144441 | |||||||||
| Expr2016015 | |||||||||
| Expr2034250 | |||||||||
| Drives_construct | WBCnstr00028625 | ||||||||
| Construct_product | WBCnstr00021752 | ||||||||
| WBCnstr00022372 | |||||||||
| WBCnstr00028625 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (161) | |||||||||
| Interaction | WBInteraction000304538 | ||||||||
| WBInteraction000315985 | |||||||||
| WBInteraction000358548 | |||||||||
| WBInteraction000435606 | |||||||||
| WBInteraction000504119 | |||||||||
| Map_info | Map | X | Position | -10.2468 | Error | 0.008472 | |||
| Positive | Positive_clone | C12D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039222 | |||||||||
| WBPaper00040964 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061738 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
