WormBase Tree Display for Gene: WBGene00015677

WBGene00015677 SMap: S_parent: Sequence: C10F3
  Identity: Version: 2
    Name: CGC_name: cpg-4
      Sequence_name: C10F3.1
      Molecular_name: C10F3.1
        C10F3.1.1
        CE08066
      Other_name: CELE_C10F3.1 Accession_evidence: NDB BX284605
      Public_name: cpg-4
    DB_info: Database: AceView gene 5G479
        WormQTL gene WBGene00015677
        WormFlux gene WBGene00015677
        NDB locus_tag CELE_C10F3.1
        Panther gene CAEEL|WormBase=WBGene00015677|UniProtKB=O16883
          family PTHR37442
        NCBI gene 178986
        RefSeq protein NM_072155.7
        SwissProt UniProtAcc O16883
        TREEFAM TREEFAM_ID TF351625
        UniProt_GCRP UniProtAcc O16883
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 16 Jun 2006 15:10:10 WBPerson2970 Name_change: CGC_name: cpg-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cpg
    Allele (57)
    Strain: WBStrain00033133
    RNASeq_FPKM (74)
    Ortholog (24)
    Paralog: WBGene00007580
      WBGene00017548 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Concise_description: cpg-4 encodes a large (782-residue), unfamiliar, putatively secretedprotein with a C-terminal low-complexity domain; CPG-4 has 35 potentialchondroitin attachment sites, mostly in its C-terminal half, 4 of whichhave been verified by mass spectrometry; CPG-4 has no obvious functionin mass RNAi assays. Paper_evidence: WBPaper00027679
          Curator_confirmed: WBPerson567
          Date_last_updated: 02 May 2007 00:00:00
      Automated_description: Enriched in several structures, including RIH; amphid neurons; cholinergic neurons; germ line; and intestinal muscle based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; dpy-10; and daf-12 based on microarray; tiling array; proteomic; and RNA-seq studies. Is affected by thirteen chemicals including manganese chloride; Alovudine; and stavudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Chondroitin proteoglycan 4. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C10F3.1
    Corresponding_CDS_history: C10F3.1:wp90
      C10F3.1:wp106
    Corresponding_transcript: C10F3.1.1
    Other_sequence: CRC04535_1
      CBC00506_1
      CR07091
      JI176018.1
      CRC08897_1
      CR01941
    Associated_feature: WBsf646846
      WBsf977426
      WBsf977427
      WBsf977428
      WBsf1000138
      WBsf1019718
      WBsf231825
  Experimental_info: RNAi_result: WBRNAi00010599 Inferred_automatically: RNAi_primary
      WBRNAi00028780 Inferred_automatically: RNAi_primary
      WBRNAi00040300 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026842
      Expr1036709
      Expr1144374
      Expr2010485
      Expr2028725
    Drives_construct: WBCnstr00028662
    Construct_product: WBCnstr00028662
    Microarray_results (20)
    Expression_cluster (171)
    Interaction: WBInteraction000395901
  Map_info: Map: V Position: -0.463374 Error: 0.002145
    Positive: Positive_clone: C10F3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027679
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene