WormBase Tree Display for Gene: WBGene00015601
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| WBGene00015601 | SMap | S_parent | Sequence | C08E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name (5) | |||||||||
| DB_info | Database | AceView | gene | 2B910 | |||||
| WormQTL | gene | WBGene00015601 | |||||||
| WormFlux | gene | WBGene00015601 | |||||||
| NDB | locus_tag | CELE_C08E3.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015601|UniProtKB=O17200 | |||||||
| family | PTHR23015 | ||||||||
| NCBI | gene | 182401 | |||||||
| RefSeq | protein | NM_061613.5 | |||||||
| TREEFAM | TREEFAM_ID | TF321294 | |||||||
| TrEMBL | UniProtAcc | O17200 | |||||||
| UniProt_GCRP | UniProtAcc | O17200 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 01 Mar 2007 11:55:18 | WBPerson2970 | Name_change | CGC_name | fbxa-166 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxa | ||||||||
| Allele (89) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00029435 | ||||||||
| 00029436 | |||||||||
| Contained_in_operon | CEOP2763 | ||||||||
| Ortholog | WBGene00082107 | Caenorhabditis remanei | From_analysis | OMA | |||||
| WBGene00073306 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| WBGene00059190 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| WBGene00061145 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
| WBGene00082006 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
| WBGene00139399 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00148513 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00153900 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00146998 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00162753 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00140743 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00147335 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00156986 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00141506 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00157213 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00141678 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00143630 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00027399 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||||
| WBGene00080375 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WBGene00084134 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WBGene00085145 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WBGene00078863 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| chrII_pilon.g3402 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (222) | |||||||||
| Structured_description | Automated_description | Enriched in intestine and pharynx based on tiling array and RNA-seq studies. Is affected by several genes including skn-1; hsf-1; and rrf-3 based on microarray; tiling array; and RNA-seq studies. Is affected by thirteen chemicals including hydrogen sulfide; methylmercury hydroxide; and methylmercuric chloride based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C08E3.9 | |||||||
| Corresponding_CDS_history | C08E3.9:wp149 | ||||||||
| Corresponding_transcript | C08E3.9.1 | ||||||||
| Associated_feature | WBsf222705 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00028675 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010453 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040099 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1144167 | ||||||||
| Expr2011492 | |||||||||
| Expr2029729 | |||||||||
| Drives_construct | WBCnstr00028722 | ||||||||
| Construct_product | WBCnstr00028722 | ||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (176) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | II | Position | -15.2397 | Error | 0.010825 | |||
| Positive | Positive_clone | C08E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
