WormBase Tree Display for Gene: WBGene00015597
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| WBGene00015597 | SMap | S_parent | Sequence | C08E3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | fbxa-162 | Person_evidence | WBPerson655 | ||||||
| Sequence_name | C08E3.5 | |||||||||
| Molecular_name | C08E3.5 | |||||||||
| Other_name | CELE_C08E3.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | fbxa-162 | |||||||||
| DB_info | Database | AceView | gene | 2B900 | ||||||
| WormQTL | gene | WBGene00015597 | ||||||||
| WormFlux | gene | WBGene00015597 | ||||||||
| NDB | locus_tag | CELE_C08E3.5 | ||||||||
| NCBI | gene | 182397 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 01 Mar 2007 11:55:18 | WBPerson2970 | Name_change | CGC_name | fbxa-162 | |||||
| 3 | 30 Jun 2014 14:06:24 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | fbxa | |||||||||
| Allele (102) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00082019 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| WBGene00061145 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00082006 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00027399 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | |||||||
| Paralog (15) | ||||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | ||||||
| Curator_confirmed | WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | |||||||||
| Automated_description | Enriched in dopaminergic neurons; head mesodermal cell; intestine; and muscle cell based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by twenty-five chemicals including methylmercury hydroxide; methylmercuric chloride; and Tunicamycin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | C08E3.5:wp104 | ||||||||
| C08E3.5:wp244 | ||||||||||
| Corresponding_pseudogene | C08E3.5 | |||||||||
| Other_sequence | FG618966.1 | |||||||||
| Experimental_info | Expr_pattern | Expr1011178 | ||||||||
| Expr1144163 | ||||||||||
| Microarray_results (15) | ||||||||||
| Expression_cluster (195) | ||||||||||
| Interaction (33) | ||||||||||
| Map_info | Map | II | Position | -15.3275 | Error | 0.004489 | ||||
| Positive | Positive_clone | C08E3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00012854 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
