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WormBase Tree Display for Gene: WBGene00015395

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Name Class

WBGene00015395SMapS_parentSequenceC03G6
IdentityVersion2
NameCGC_namenhr-147Person_evidenceWBPerson600
Sequence_nameC03G6.8
Molecular_nameC03G6.8
C03G6.8.1
CE45420
C03G6.8.2
Other_nameCELE_C03G6.8Accession_evidenceNDBBX284605
Public_namenhr-147
DB_infoDatabaseAceViewgene5H827
WormQTLgeneWBGene00015395
WormFluxgeneWBGene00015395
NDBlocus_tagCELE_C03G6.8
PanthergeneCAEEL|WormBase=WBGene00015395|UniProtKB=O01448
familyPTHR24083
NCBIgene182170
RefSeqproteinNM_072472.4
TREEFAMTREEFAM_IDTF322854
TrEMBLUniProtAccO01448
UniProt_GCRPUniProtAccO01448
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:56WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
222 Jul 2005 10:29:11WBPerson2970Name_changeCGC_namenhr-147
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (126)
StrainWBStrain00036711
RNASeq_FPKM (74)
GO_annotation (13)
OrthologWBGene00024524Caenorhabditis briggsaeFrom_analysisOMA
WBGene00052777Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00190479Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00162134Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00143284Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00143316Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00148890Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00151027Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00028967Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00222339Brugia malayiFrom_analysisWormBase-Compara
WBGene00224250Brugia malayiFrom_analysisWormBase-Compara
WBGene00224690Brugia malayiFrom_analysisWormBase-Compara
CSP26.g6626Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g6627Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g5124Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g925Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17941Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g17942Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g17943Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g18671Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g6978Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g5653Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5672Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g11228Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11022Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g13370Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g24538Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g9449Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1971Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00649.g13140Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_V.g18570Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19790Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19793Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19795Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20060Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20061Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00149.g5686Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00149.g5687Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00149.g5688Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00659.g14113Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00659.g14114Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04527.g33146Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_05927.g35802Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_24390Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_24391Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_017739Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g19451Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g23149Panagrellus redivivusFrom_analysisWormBase-Compara
chrV_pilon.g14668Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237444Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00239244Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00241769Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00244924Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00267740Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288423Trichuris murisFrom_analysisWormBase-Compara
WBGene00292803Trichuris murisFrom_analysisWormBase-Compara
WBGene00301850Trichuris murisFrom_analysisWormBase-Compara
WBGene00301886Trichuris murisFrom_analysisWormBase-Compara
Paralog (42)
Structured_descriptionAutomated_descriptionPredicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC03G6.8
Corresponding_CDS_historyC03G6.8:wp220
Corresponding_transcriptC03G6.8.1
C03G6.8.2
Associated_featureWBsf646932
WBsf978411
WBsf231971
Transcription_factorWBTranscriptionFactor000950
Experimental_infoRNAi_result (13)
Expr_patternExpr1014476
Expr1143657
Expr2014047
Expr2032287
Drives_constructWBCnstr00028878
Construct_productWBCnstr00028878
Microarray_resultsSMD_C03G6.12
SMD_C03G6.8
183651_at
A_12_P117128
A_12_P173302
A_12_P173303
Aff_C03G6.8
GPL13394_WBGene00015395
GPL13914_C03G6.8
GPL14144_C03G6.8_590-649_0.733_94_C
GPL14144_C03G6.8_660-719_0.775_72_B
GPL14144_C03G6.8_906-965_0.956_2_A
GPL19516_CGZ0002204
GPL21109_C03G6.8
GPL3518_CE07882
GPL8304_CE_WBGene00015395_A
GPL8304_CE_WBGene00015395_B
GPL8673_C03G6_8P00048
GPL8673_C03G6_8P00638
GPL8673_C03G6_8P00799
GPL9450_C03G6.8
cea2.i.32500
Expression_cluster (106)
InteractionWBInteraction000234713
WBInteraction000252800
WBInteraction000338612
WBInteraction000344847
WBInteraction000402895
WBInteraction000431169
WBInteraction000439324
WBInteraction000535015
WBInteraction000535063
Map_infoMapVPosition0.68243Error0.002018
PositivePositive_cloneC03G6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene