WormBase Tree Display for Gene: WBGene00015344

WBGene00015344 SMap: S_parent: Sequence: C02E11
  Identity: Version: 2
    Name: CGC_name: nra-4 Paper_evidence: WBPaper00034730
          Person_evidence: WBPerson2633
      Sequence_name: C02E11.1
      Molecular_name: C02E11.1a
        C02E11.1a.1
        CE28528
        C02E11.1b
        CE32040
        C02E11.1b.1
      Other_name: CELE_C02E11.1 Accession_evidence: NDB BX284605
      Public_name: nra-4
    DB_info: Database: AceView gene 5B508C
            5B508
        WormQTL gene WBGene00015344
        WormFlux gene WBGene00015344
        NDB locus_tag CELE_C02E11.1
        Panther gene CAEEL|WormBase=WBGene00015344|UniProtKB=H2KYE0
          family PTHR23303
        NCBI gene 3565008
        RefSeq protein NM_070966.4
            NM_182391.2
        SwissProt UniProtAcc H2KYE0
        TREEFAM TREEFAM_ID TF313696
        UniProt_GCRP UniProtAcc H2KYE0
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 18 Aug 2009 11:24:59 WBPerson9133 Name_change: CGC_name: nra-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nra
    Allele (118)
    Strain: WBStrain00001345
      WBStrain00001346
      WBStrain00001684
    RNASeq_FPKM (74)
    GO_annotation: 00021518
      00021519
      00021520
      00021521
      00021522
      00021523
      00021524
    Ortholog (42)
    Structured_description: Automated_description: Involved in protein-containing complex assembly. Located in endoplasmic reticulum. Expressed in germ line; motor neurons; and non-striated muscle. Is an ortholog of human NOMO1 (NODAL modulator 1); NOMO2 (NODAL modulator 2); and NOMO3 (NODAL modulator 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C02E11.1a
      C02E11.1b
    Corresponding_transcript: C02E11.1a.1
      C02E11.1b.1
    Other_sequence (43)
    Associated_feature: WBsf668733
      WBsf999243
      WBsf999244
      WBsf999245
      WBsf1019126
      WBsf233312
      WBsf233313
  Experimental_info: RNAi_result: WBRNAi00114652 Inferred_automatically: RNAi_primary
      WBRNAi00028344 Inferred_automatically: RNAi_primary
      WBRNAi00039416 Inferred_automatically: RNAi_primary
      WBRNAi00009989 Inferred_automatically: RNAi_primary
    Expr_pattern (14)
    Drives_construct: WBCnstr00002238
      WBCnstr00002239
      WBCnstr00002508
      WBCnstr00004266
      WBCnstr00004364
      WBCnstr00013430
      WBCnstr00028916
    Construct_product: WBCnstr00028916
    Microarray_results (26)
    Expression_cluster: WBPaper00005700:transmembrane_protein
      WBPaper00029359_1166
      WBPaper00029359_1197
      WBPaper00029359_1291
      WBPaper00029359_1311
      WBPaper00029359_1320
      WBPaper00029359_1326
      WBPaper00029359_1345
      WBPaper00029359_1357
      WBPaper00029359_1439
      WBPaper00029359_1458
      WBPaper00029359_1546
      WBPaper00029359_1549
      WBPaper00029359_1557
      WBPaper00029359_1599
      WBPaper00029359_1618
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037047:insoluble_protein
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_embryo_SelectivelyEnriched
      WBPaper00038289:oocyte_protein
      WBPaper00040965:lipid-droplet_associated_protein
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044746:aging_downregulated_HeatShock
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045729:gld-2(RNAi)_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050094:glp-1(gf)_upregulated
      WBPaper00050412:cco-1(RNAi)_upregulated_N2
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050698:DEP-1_interacting
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00055049:S.gordonii_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056039:ptrn-1(tm5597)_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056284:ints-11(RNAi)_downregulated
      WBPaper00056293:rpl-5(0)-rpl-33(0)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00056826:SGP_biased
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059440:GLP-1_activated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059598:HeatShock_upregulated
      WBPaper00059605:MUT-16_interacting
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061466:nath-10(icb99)_downregulated
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061527:uggt-1_21889-tag-320_20312
      WBPaper00061692:acivicin_upregulated
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062554:MAGU-2_interacting
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064201:SNA-3_interacting
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064716:paraquat_downregulated
      WBPaper00064992:heat-shock_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065158:AFD_depleted
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065373:sek-1(km4)_downregulated_Ref
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      cgc4386_cluster_6_2
      cgc4489_group_8
      WBPaper00025032:cluster_22
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027758:Group_II
      WBPaper00032948:FedUp
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00041002:HQ_3d_2.0mM_Down
      WBPaper00041207:CE_dauer_down
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_C
    Interaction (143)
  Map_info: Map: V Position: -19.8616 Error: 0.001919
    Positive: Positive_clone: C02E11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00032165
    WBPaper00034730
    WBPaper00035364
    WBPaper00038491
    WBPaper00041771
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene