WormBase Tree Display for Gene: WBGene00015330

WBGene00015330 SMap: S_parent: Sequence: C02B10
  Identity: Version: 2
    Name: CGC_name: pygo-1 Person_evidence: WBPerson6609
            WBPerson1816
      Sequence_name: C02B10.5
      Molecular_name: C02B10.5a
        C02B10.5a.1
        CE16802
        C02B10.5b
        CE49438
        C02B10.5a.2
        C02B10.5b.1
      Other_name: CELE_C02B10.5 Accession_evidence: NDB BX284604
      Public_name: pygo-1
    DB_info: Database: AceView gene 4F851
        WormQTL gene WBGene00015330
        WormFlux gene WBGene00015330
        NDB locus_tag CELE_C02B10.5
        Panther gene CAEEL|WormBase=WBGene00015330|UniProtKB=O44447
          family PTHR23194
        NCBI gene 177280
        RefSeq protein NM_001380212.1
            NM_068318.9
        TrEMBL UniProtAcc O44447
            V6CLE9
        UniProt_GCRP UniProtAcc O44447
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 05 May 2023 12:43:53 WBPerson51134 Name_change: CGC_name: pygo-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pygo
    Allele (49)
    Strain: WBStrain00037775
      WBStrain00037794
    RNASeq_FPKM (74)
    GO_annotation: 00032446
      00032447
      00032448
      00032449
    Ortholog (23)
    Structured_description: Automated_description: Enriched in several structures, including ABalppappa; ABarappppa; ABplpppaapa; germ line; and neurons based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; sir-2.1; and pmk-1 based on RNA-seq and microarray studies. Is affected by nine chemicals including rotenone; Rifampin; and multi-walled carbon nanotube based on RNA-seq and microarray studies. Human PYGO1 enables methylated histone binding activity. Is an ortholog of human PYGO1 (pygopus family PHD finger 1) and PYGO2 (pygopus family PHD finger 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C02B10.5a
      C02B10.5b
    Corresponding_transcript: C02B10.5a.1
      C02B10.5a.2
      C02B10.5b.1
    Other_sequence: CBC02425_1
      CRC00474_1
      CBC13422_1
      CR00033
      CR00030
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00008322 Inferred_automatically: RNAi_primary
      WBRNAi00085710 Inferred_automatically: RNAi_primary
      WBRNAi00024446 Inferred_automatically: RNAi_primary
      WBRNAi00039389 Inferred_automatically: RNAi_primary
      WBRNAi00028327 Inferred_automatically: RNAi_primary
      WBRNAi00001712 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017239
      Expr1036567
      Expr1143506
      Expr2000320
      Expr2018544
    Drives_construct: WBCnstr00028929
    Construct_product: WBCnstr00028929
    Microarray_results (24)
    Expression_cluster (98)
    Interaction (66)
  Map_info: Map: IV Position: 1.43834
    Positive: Positive_clone: C02B10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00048493
    WBPaper00060275
    WBPaper00065308
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene