WormBase Tree Display for Gene: WBGene00015327
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WBGene00015327 | SMap | S_parent | Sequence | C02B10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | snpn-1 | Person_evidence | WBPerson253 | |||||
Sequence_name | C02B10.2 | ||||||||
Molecular_name | C02B10.2 | ||||||||
C02B10.2.1 | |||||||||
CE24776 | |||||||||
Other_name | CELE_C02B10.2 | Accession_evidence | NDB | BX284604 | |||||
Public_name | snpn-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 31 Aug 2012 11:56:39 | WBPerson2970 | Name_change | CGC_name | snpn-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | snpn | ||||||||
Allele | WBVar00424621 | ||||||||
WBVar00908698 | |||||||||
WBVar01794681 | |||||||||
WBVar00250855 | |||||||||
WBVar01499754 | |||||||||
WBVar01499242 | |||||||||
WBVar01499633 | |||||||||
WBVar01481837 | |||||||||
WBVar01500245 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (15) | |||||||||
Ortholog | WBGene00039092 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00064022 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00074581 | Caenorhabditis remanei | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00141809 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00164563 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00132304 | Caenorhabditis japonica | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00091108 | Pristionchus pacificus | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00222164 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
CBOVI.g11356 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP26.g14567 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g6449 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g6467 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g23864 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g8638 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g9406 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g21321 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g1141 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-snpn-1 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_01256.g19628 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_11845 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_013527 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Pan_g18383 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
Sp34_40335300 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrIV_pilon.g10354 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00240281 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
FB:FBgn0031455 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
OrthoFinder | |||||||||
Panther | |||||||||
ZFIN:ZDB-GENE-060503-343 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OrthoFinder | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
HGNC:17145 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OrthoFinder | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
MGI:1333745 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OrthoFinder | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
RGD:1560377 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OrthoFinder | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
Structured_description | Automated_description | Predicted to enable SNARE binding activity. Involved in endosomal transport and positive regulation of intracellular protein transport. Predicted to be located in synaptic vesicle. Predicted to be part of BLOC-1 complex and BORC complex. Used to study Hermansky-Pudlak syndrome. Is an ortholog of human SNAPIN (SNAP associated protein). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:3753 | Homo sapiens | Paper_evidence | WBPaper00041456 | ||||
Accession_evidence | OMIM | 614171 | |||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 17 Oct 2018 00:00:00 | ||||||||
Disease_relevance | Defective formation of lysosome-related organelles (LROs) underlies the human disease Hermansky-Pudlak syndrome (HPS); the nine genes currently implicated in causing HPS encode subunits of the AP-3, BLOC-1, BLOC-2, or BLOC-3 complexes; BLOC1 is required for normal biogenesis of specialized organelles of the endosomal-lysosomal system, such as melanosomes and platelet dense granules; C. elegans glo-2 and snpn-1 encode Pallidin and Snapin, which are BLOC-1 subunit homologs, respectively; studies in elegans show that snpn-1 and glo-2 function in trafficking to, and biogenesis of gut granules (gut granules are intestinal cell-specific LROs); snpn-1, but not glo-2 interacts with dsbn-1, which is similar to human dysbindin (DTNBP1), a mammalian BLOC-1 subunit; this system provides an in vivo model to study the genetics and interactions of BLOC1 subunits. | Homo sapiens | Paper_evidence | WBPaper00041456 | |||||
Accession_evidence | OMIM | 614171 | |||||||
607007 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 19 Feb 2014 00:00:00 | ||||||||
Models_disease_asserted | WBDOannot00000097 | ||||||||
Molecular_info | Corresponding_CDS | C02B10.2 | |||||||
Corresponding_transcript | C02B10.2.1 | ||||||||
Other_sequence | CBC01342_1 | ||||||||
Associated_feature (12) | |||||||||
Experimental_info | RNAi_result | WBRNAi00008198 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00028325 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009965 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00039386 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1019539 | ||||||||
Expr1036564 | |||||||||
Expr1143503 | |||||||||
Expr2015964 | |||||||||
Expr2034199 | |||||||||
Drives_construct | WBCnstr00017656 | ||||||||
WBCnstr00028932 | |||||||||
Construct_product | WBCnstr00017656 | ||||||||
WBCnstr00028932 | |||||||||
Microarray_results (20) | |||||||||
Expression_cluster (122) | |||||||||
Interaction (60) | |||||||||
Map_info | Map | IV | Position | 1.44248 | |||||
Positive | Positive_clone | C02B10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00041456 | |||||||||
WBPaper00042250 | |||||||||
WBPaper00052655 | |||||||||
WBPaper00052935 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |