WormBase Tree Display for Gene: WBGene00015229
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WBGene00015229 | SMap | S_parent | Sequence | B0511 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-125 | Person_evidence | WBPerson655 | |||||
Sequence_name | B0511.3 | ||||||||
Molecular_name | B0511.3 | ||||||||
B0511.3.1 | |||||||||
CE41858 | |||||||||
Other_name | CELE_B0511.3 | Accession_evidence | NDB | BX284601 | |||||
Public_name | fbxa-125 | ||||||||
DB_info | Database | AceView | gene | 1L225 | |||||
WormQTL | gene | WBGene00015229 | |||||||
WormFlux | gene | WBGene00015229 | |||||||
NDB | locus_tag | CELE_B0511.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00015229|UniProtKB=O61822 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 182016 | |||||||
RefSeq | protein | NM_060386.5 | |||||||
TrEMBL | UniProtAcc | O61822 | |||||||
UniProt_GCRP | UniProtAcc | O61822 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-125 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (22) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00023954 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
WBGene00033413 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00035626 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00037960 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00041155 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00041890 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
chrI_pilon.g2382 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (215) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in germ line; hypodermis; and in male based on RNA-seq studies. Is affected by several genes including daf-2; pie-1; and hsf-1 based on microarray and RNA-seq studies. Is affected by thirteen chemicals including methylmercuric chloride; Tunicamycin; and manganese chloride based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | B0511.3 | |||||||
Corresponding_CDS_history | B0511.3:wp185 | ||||||||
Corresponding_transcript | B0511.3.1 | ||||||||
Experimental_info | RNAi_result | WBRNAi00028188 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00002864 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00039145 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1026454 | ||||||||
Expr1143301 | |||||||||
Expr2029704 | |||||||||
Drives_construct | WBCnstr00028988 | ||||||||
Construct_product | WBCnstr00028988 | ||||||||
Microarray_results (15) | |||||||||
Expression_cluster (131) | |||||||||
Interaction | WBInteraction000151422 | ||||||||
WBInteraction000175126 | |||||||||
WBInteraction000176072 | |||||||||
WBInteraction000311914 | |||||||||
WBInteraction000350467 | |||||||||
WBInteraction000398993 | |||||||||
WBInteraction000415660 | |||||||||
WBInteraction000462206 | |||||||||
Map_info | Map | I | Position | 5.06005 | Error | 9.9e-05 | |||
Positive | Positive_clone | B0511 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |