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WormBase Tree Display for Gene: WBGene00015229

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Name Class

WBGene00015229SMapS_parentSequenceB0511
IdentityVersion2
NameCGC_namefbxa-125Person_evidenceWBPerson655
Sequence_nameB0511.3
Molecular_nameB0511.3
B0511.3.1
CE41858
Other_nameCELE_B0511.3Accession_evidenceNDBBX284601
Public_namefbxa-125
DB_infoDatabaseAceViewgene1L225
WormQTLgeneWBGene00015229
WormFluxgeneWBGene00015229
NDBlocus_tagCELE_B0511.3
PanthergeneCAEEL|WormBase=WBGene00015229|UniProtKB=O61822
familyPTHR23015
NCBIgene182016
RefSeqproteinNM_060386.5
TrEMBLUniProtAccO61822
UniProt_GCRPUniProtAccO61822
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:55WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
212 Dec 2005 15:18:56WBPerson2970Name_changeCGC_namefbxa-125
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxa
Allele (22)
RNASeq_FPKM (74)
OrthologWBGene00023954Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00033413Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00035626Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00037960Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00041155Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00041890Caenorhabditis briggsaeFrom_analysisOrthoMCL
chrI_pilon.g2382Caenorhabditis elegansFrom_analysisWormBase-Compara
Paralog (215)
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in germ line; hypodermis; and in male based on RNA-seq studies. Is affected by several genes including daf-2; pie-1; and hsf-1 based on microarray and RNA-seq studies. Is affected by thirteen chemicals including methylmercuric chloride; Tunicamycin; and manganese chloride based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSB0511.3
Corresponding_CDS_historyB0511.3:wp185
Corresponding_transcriptB0511.3.1
Experimental_infoRNAi_resultWBRNAi00028188Inferred_automaticallyRNAi_primary
WBRNAi00002864Inferred_automaticallyRNAi_primary
WBRNAi00039145Inferred_automaticallyRNAi_primary
Expr_patternExpr1026454
Expr1143301
Expr2029704
Drives_constructWBCnstr00028988
Construct_productWBCnstr00028988
Microarray_results (15)
Expression_cluster (131)
InteractionWBInteraction000151422
WBInteraction000175126
WBInteraction000176072
WBInteraction000311914
WBInteraction000350467
WBInteraction000398993
WBInteraction000415660
WBInteraction000462206
Map_infoMapIPosition5.06005Error9.9e-05
PositivePositive_cloneB0511Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00012854
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene