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WormBase Tree Display for Gene: WBGene00015059

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Name Class

WBGene00015059SMapS_parentSequenceB0228
IdentityVersion1
NameSequence_nameB0228.1
Molecular_nameB0228.1
B0228.1.1
CE41748
Other_nameCELE_B0228.1Accession_evidenceNDBBX284602
Public_nameB0228.1
DB_infoDatabaseAceViewgene2I45
WormQTLgeneWBGene00015059
WormFluxgeneWBGene00015059
NDBlocus_tagCELE_B0228.1
NCBIgene181861
RefSeqproteinNM_063227.5
SwissProtUniProtAccQ09220
TREEFAMTREEFAM_IDTF317704
UniProt_GCRPUniProtAccQ09220
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:55WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (22)
RNASeq_FPKM (74)
Ortholog (18)
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABalppppaa; ABplpaaaaa; ABplpaaaap; head ganglion; and interfacial epithelial cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; tiling array; and RNA-seq studies. Is affected by eighteen chemicals including rotenone; Psoralens; and allantoin based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSB0228.1
Corresponding_CDS_historyB0228.1:wp184
Corresponding_transcriptB0228.1.1
Other_sequenceCJC01082_1
Associated_featureWBsf221637
Experimental_infoRNAi_resultWBRNAi00038761Inferred_automaticallyRNAi_primary
WBRNAi00028011Inferred_automaticallyRNAi_primary
Expr_patternExpr1012631
Expr1142972
Expr2000071
Expr2018288
Drives_constructWBCnstr00029118
Construct_productWBCnstr00029118
Microarray_results (17)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00040134:nhr-49(RNAi)_regulated_protein
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00042561:smgl-2(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045017:blmp-1(tm548)_upregulated
WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
WBPaper00045774:clk-1_upregulated
WBPaper00046012:tdp-1(ok803)_upregulated
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00048988:neuron_expressed
WBPaper00049134:hpk-1(pk1393)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050990:hypodermis_enriched
WBPaper00050990:hypodermis_expressed
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053664:ins-11(tm1053)_downregulated
WBPaper00053810:clk-1(qm30)_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055013:hmg-4(RNAi)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055482:Tunicamycin_downregulated
WBPaper00055648:nerve-ring_expressed
WBPaper00055827:daf-2(e1370)_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00056167:Cry5B_downregulated
WBPaper00056169:rrf-3(pk1426)_downregulated_L2
WBPaper00056169:rrf-3(pk1426)_upregulated_L3
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056826:SGP_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00058927:high-redox-state_downregulated
WBPaper00058948:npr-8(ok1439)_downregulated_OP50
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060661:hypoxia_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061340:ADF_AWB
WBPaper00061340:ADL_parent
WBPaper00061340:ASG_AWA
WBPaper00061340:B
WBPaper00061340:Excretory_duct_and_pore
WBPaper00061340:F_U
WBPaper00061340:Glia
WBPaper00061340:Neuroblast_AWC_SAAVx
WBPaper00061340:Parents_of_U_F_B_DVA
WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
WBPaper00061340:RMD
WBPaper00061340:SIA
WBPaper00061340:SMB
WBPaper00061340:SMD
WBPaper00061340:XXX
WBPaper00061341:28C_24h_upregulated
WBPaper00061527:pqn-31-ttr-21
WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_downregulated
WBPaper00061651:AMso_enriched
WBPaper00061753:csr-1(tor159)_upregulated_20C
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062347:blmp-1(tm548)_upregulated
WBPaper00062590:Aging_upregulated_neuron
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064122:vulva_transcriptome
WBPaper00064716:paraquat_downregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00064769:him-17(me24)_upregulated
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00065074:glna(-)_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065623:112
WBPaper00065835:Day5_vs_Day1_downregulated
WBPaper00065841:79_0
WBPaper00065841:79_2
WBPaper00065841:111_0
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
cgc4489_group_12
WBPaper00025099:MA_specific
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00030985:Photorhabdus_luminescens_downregulated
WBPaper00031003:hlh_1_enriched
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00036286:Pattern_I
WBPaper00038172:crh-1null_up_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040963:Q200_up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00045437:Toxic-Se_upregulated
WBPaper00045673:colistin_downregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00051387:Triclosan_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
Interaction (60)
Map_infoPositivePositive_cloneB0228Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII0.560327
MethodGene