WormBase Tree Display for Gene: WBGene00015008
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WBGene00015008 | SMap | S_parent | Sequence | B0041 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | lmd-2 | Person_evidence | WBPerson8574 | |||
Sequence_name | B0041.3 | ||||||
Molecular_name | B0041.3 | ||||||
B0041.3.1 | |||||||
CE51424 | |||||||
Other_name | CELE_B0041.3 | Accession_evidence | NDB | BX284601 | |||
Public_name | lmd-2 | ||||||
DB_info | Database | AceView | gene | 1F213 | |||
WormQTL | gene | WBGene00015008 | |||||
WormFlux | gene | WBGene00015008 | |||||
NDB | locus_tag | CELE_B0041.3 | |||||
Panther | gene | CAEEL|WormBase=WBGene00015008|UniProtKB=O02055 | |||||
family | PTHR20932 | ||||||
NCBI | gene | 172073 | |||||
RefSeq | protein | NM_059014.3 | |||||
TREEFAM | TREEFAM_ID | TF318444 | |||||
TrEMBL | UniProtAcc | O02055 | |||||
UniProt_GCRP | UniProtAcc | O02055 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lmd | ||||||
Allele (21) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (32) | |||||||
Paralog | WBGene00009665 | Caenorhabditis elegans | From_analysis | Panther | |||
Structured_description | Automated_description | Enriched in body wall musculature; intestine; neurons; and retrovesicular ganglion based on microarray and RNA-seq studies. Is affected by several genes including daf-12; sir-2.1; and clk-1 based on microarray; tiling array; and RNA-seq studies. Is affected by seven chemicals including Doxycycline; Ketamine; and Quercetin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: LysM domain superfamily; LysM domain; and LysM and putative peptidoglycan-binding domain-containing protein 1-4. Is an ortholog of human LYSMD1 (LysM domain containing 1) and LYSMD2 (LysM domain containing 2). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | B0041.3 | |||||
Corresponding_CDS_history | B0041.3:wp252 | ||||||
Corresponding_transcript | B0041.3.1 | ||||||
Other_sequence | MI01003 | ||||||
CV199347.1 | |||||||
Associated_feature | WBsf643226 | ||||||
WBsf983455 | |||||||
WBsf217555 | |||||||
Experimental_info | RNAi_result | WBRNAi00023624 | Inferred_automatically | RNAi_primary | |||
WBRNAi00002828 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00023012 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027965 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038687 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00023913 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090772 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00023113 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1024960 | ||||||
Expr1036415 | |||||||
Expr1142894 | |||||||
Expr2013231 | |||||||
Expr2031462 | |||||||
Drives_construct | WBCnstr00029163 | ||||||
Construct_product | WBCnstr00029163 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (94) | |||||||
Interaction | WBInteraction000194521 | ||||||
WBInteraction000237241 | |||||||
WBInteraction000248467 | |||||||
WBInteraction000249449 | |||||||
WBInteraction000358296 | |||||||
WBInteraction000394851 | |||||||
WBInteraction000417213 | |||||||
WBInteraction000449092 | |||||||
WBInteraction000474744 | |||||||
Map_info | Map | I | Position | -1.03468 | |||
Positive | Positive_clone | B0041 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00031295 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |