WormBase Tree Display for Gene: WBGene00015008
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WBGene00015008 | SMap | S_parent | Sequence | B0041 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | lmd | |||||
Allele (21) | ||||||
RNASeq_FPKM (74) | ||||||
Ortholog (32) | ||||||
Paralog | WBGene00009665 | Caenorhabditis elegans | From_analysis | Panther | ||
Structured_description | Automated_description | Enriched in body wall musculature; intestine; neurons; and retrovesicular ganglion based on microarray and RNA-seq studies. Is affected by several genes including daf-12; sir-2.1; and clk-1 based on microarray; tiling array; and RNA-seq studies. Is affected by seven chemicals including Doxycycline; Ketamine; and Quercetin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: LysM domain superfamily; LysM domain; and LysM and putative peptidoglycan-binding domain-containing protein 1-4. Is an ortholog of human LYSMD1 (LysM domain containing 1) and LYSMD2 (LysM domain containing 2). | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | B0041.3 | ||||
Corresponding_CDS_history | B0041.3:wp252 | |||||
Corresponding_transcript | B0041.3.1 | |||||
Other_sequence | MI01003 | |||||
CV199347.1 | ||||||
Associated_feature | WBsf643226 | |||||
WBsf983455 | ||||||
WBsf217555 | ||||||
Experimental_info | RNAi_result | WBRNAi00023624 | Inferred_automatically | RNAi_primary | ||
WBRNAi00002828 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00023012 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00027965 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00038687 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00023913 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00090772 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00023113 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1024960 | |||||
Expr1036415 | ||||||
Expr1142894 | ||||||
Expr2013231 | ||||||
Expr2031462 | ||||||
Drives_construct | WBCnstr00029163 | |||||
Construct_product | WBCnstr00029163 | |||||
Microarray_results (18) | ||||||
Expression_cluster (94) | ||||||
Interaction | WBInteraction000194521 | |||||
WBInteraction000237241 | ||||||
WBInteraction000248467 | ||||||
WBInteraction000249449 | ||||||
WBInteraction000358296 | ||||||
WBInteraction000394851 | ||||||
WBInteraction000417213 | ||||||
WBInteraction000449092 | ||||||
WBInteraction000474744 | ||||||
Map_info | Map | I | Position | -1.03468 | ||
Positive | Positive_clone | B0041 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00031295 | |||||
WBPaper00038491 | ||||||
WBPaper00055090 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |