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WormBase Tree Display for Gene: WBGene00014218

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Name Class

WBGene00014218SMapS_parentSequenceZK1098
IdentityVersion2
NameCGC_nameprp-40Person_evidenceWBPerson11752
Sequence_nameZK1098.1
Molecular_nameZK1098.1a
ZK1098.1a.1
CE03847
ZK1098.1b
CE46142
ZK1098.1c
CE00362
ZK1098.1b.1
ZK1098.1c.1
Other_nameCELE_ZK1098.1Accession_evidenceNDBBX284603
Public_nameprp-40
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:55WBPerson1971EventImportedInitial conversion from CDS class of WS125
211 Mar 2021 09:37:10WBPerson1983Name_changeCGC_nameprp-40
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classprp
Allele (36)
Possibly_affected_byWBVar02157269
RNASeq_FPKM (74)
GO_annotation00043377
00043378
00043379
00043380
00043381
00043382
00043383
00120933
Contained_in_operonCEOP3596
OrthologWBGene00031544Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00131830Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00085223Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00109759Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00185018Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00269280Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4950Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g16289Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g13221Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g15200Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g15202Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14083Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3256Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25784Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g25786Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g11116Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g12909Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g12911Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g12940Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g20941Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g26758Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3381Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00002.g187Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-ZK1098.1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g10812Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18376Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00327.g9480Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07393Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_07395Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_009450Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12935Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12937Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12942Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5978Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30193710Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8636Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00245499Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00259824Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292696Trichuris murisFrom_analysisWormBase-Compara
SGD:S000001495Saccharomyces cerevisiaeFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
FB:FBgn0031492Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-274Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:25031Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:16463Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1925583Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1860512Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1311401Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1565411Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptionZK1098.1 encodes a protein, with multiple WW/rsp5/WWP domains and FF domains, required for embryonic viability and for normally high rates of postembryonic growth.Paper_evidenceWBPaper00005654
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Located in nucleus. Expressed in several structures, including body wall musculature; gonad; and nervous system. Is an ortholog of human PRPF40A (pre-mRNA processing factor 40 homolog A).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK1098.1a
ZK1098.1b
ZK1098.1c
Corresponding_transcriptZK1098.1a.1
ZK1098.1b.1
ZK1098.1c.1
Other_sequence (55)
Associated_featureWBsf645494
WBsf659413
WBsf659414
WBsf659415
WBsf993716
WBsf993717
WBsf993718
WBsf1015626
WBsf225586
Experimental_infoRNAi_result (21)
Expr_patternExpr9513
Expr15830
Expr1012317
Expr1036371
Expr1162531
Expr2008705
Expr2026939
Drives_constructWBCnstr00029218
Construct_productWBCnstr00014078
WBCnstr00029218
Microarray_results (23)
Expression_cluster (102)
Interaction (111)
Map_infoPositivePositive_cloneZK1098Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII0.577519
ReferenceWBPaper00035598
WBPaper00038444
WBPaper00038491
WBPaper00055090
WBPaper00061804
WBPaper00063335
WBPaper00065227
MethodGene