WormBase Tree Display for Gene: WBGene00014204
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| WBGene00014204 | SMap | S_parent | Sequence | ZK1058 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | ccdc-47 | Person_evidence | WBPerson4055 | |||||
| Sequence_name | ZK1058.4 | ||||||||
| Molecular_name | ZK1058.4 | ||||||||
| ZK1058.4.1 | |||||||||
| CE01104 | |||||||||
| Other_name | tag-252 | Person_evidence | WBPerson201 | ||||||
| CELE_ZK1058.4 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | ccdc-47 | ||||||||
| DB_info | Database | AceView | gene | 3F7 | |||||
| WormQTL | gene | WBGene00014204 | |||||||
| WormFlux | gene | WBGene00014204 | |||||||
| NDB | locus_tag | CELE_ZK1058.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00014204|UniProtKB=Q23382 | |||||||
| family | PTHR12883 | ||||||||
| NCBI | gene | 175505 | |||||||
| RefSeq | protein | NM_065387.5 | |||||||
| TREEFAM | TREEFAM_ID | TF314902 | |||||||
| TrEMBL | UniProtAcc | Q23382 | |||||||
| UniProt_GCRP | UniProtAcc | Q23382 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Apr 2005 11:55:18 | WBPerson2970 | Name_change | CGC_name | tag-252 | ||||
| 3 | 20 Jul 2007 11:50:19 | WBPerson2970 | Name_change | CGC_name | ccdc-47 | ||||
| Other_name | tag-252 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ccdc | ||||||||
| Allele (34) | |||||||||
| Strain | WBStrain00003536 | ||||||||
| WBStrain00036071 | |||||||||
| WBStrain00051690 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00078305 | ||||||||
| 00078306 | |||||||||
| 00078307 | |||||||||
| 00078308 | |||||||||
| 00078309 | |||||||||
| 00120924 | |||||||||
| 00120925 | |||||||||
| 00120926 | |||||||||
| Contained_in_operon | CEOP3144 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to enable calcium ion binding activity. Predicted to be involved in endoplasmic reticulum calcium ion homeostasis. Predicted to be located in rough endoplasmic reticulum membrane. Expressed in tail. Is an ortholog of human CCDC47 (coiled-coil domain containing 47). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK1058.4 | |||||||
| Corresponding_transcript | ZK1058.4.1 | ||||||||
| Other_sequence (60) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062479 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038134 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095826 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006133 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059085 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram470 | ||||||||
| Expr7178 | |||||||||
| Expr1013479 | |||||||||
| Expr1036361 | |||||||||
| Expr1162515 | |||||||||
| Expr2009756 | |||||||||
| Expr2027996 | |||||||||
| Drives_construct | WBCnstr00003990 | ||||||||
| WBCnstr00029227 | |||||||||
| Construct_product | WBCnstr00029227 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction (50) | |||||||||
| Map_info | Map | III | Position | -4.21477 | Error | 0.025995 | |||
| Positive | Positive_clone | ZK1058 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5095 | |||||||
| 5499 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
