WormBase Tree Display for Gene: WBGene00013858
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| WBGene00013858 | SMap | S_parent | Sequence | ZC168 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ssp-34 | Person_evidence | WBPerson261 | |||||
| Sequence_name | ZC168.6 | ||||||||
| Molecular_name | ZC168.6 | ||||||||
| ZC168.6.1 | |||||||||
| CE06572 | |||||||||
| Other_name | CELE_ZC168.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ssp-34 | ||||||||
| DB_info | Database | AceView | gene | 4L504 | |||||
| WormQTL | gene | WBGene00013858 | |||||||
| WormFlux | gene | WBGene00013858 | |||||||
| NDB | locus_tag | CELE_ZC168.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013858|UniProtKB=Q23246 | |||||||
| family | PTHR22947 | ||||||||
| NCBI | gene | 177966 | |||||||
| RefSeq | protein | NM_069588.6 | |||||||
| SwissProt | UniProtAcc | Q23246 | |||||||
| UniProt_GCRP | UniProtAcc | Q23246 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Nov 2010 15:19:39 | WBPerson2970 | Name_change | CGC_name | ssp-34 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ssp | ||||||||
| Allele (14) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (37) | |||||||||
| Paralog (33) | |||||||||
| Structured_description | Automated_description | Enriched in ABalaapppa; ABalapaapa; GABAergic neurons; and in male based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; glp-1; and age-1 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-one chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq; proteomic; and microarray studies. Is predicted to encode a protein with the following domains: Major sperm protein (MSP) domain; MSP (Major sperm protein) domain; PapD-like superfamily; and Immunoglobulin-like fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC168.6 | |||||||
| Corresponding_transcript | ZC168.6.1 | ||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf997689 | ||||||||
| WBsf997690 | |||||||||
| WBsf1018132 | |||||||||
| WBsf230769 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058760 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00103630 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021587 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037966 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015211 | ||||||||
| Expr1036198 | |||||||||
| Expr1162179 | |||||||||
| Expr2016936 | |||||||||
| Expr2035084 | |||||||||
| Drives_construct | WBCnstr00029496 | ||||||||
| Construct_product | WBCnstr00029496 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (198) | |||||||||
| Interaction (281) | |||||||||
| Map_info | Map | IV | Position | 4.69028 | Error | 0.001664 | |||
| Positive | Positive_clone | ZC168 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
