WormBase Tree Display for Gene: WBGene00013840
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WBGene00013840 | SMap | S_parent | Sequence | ZC47 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | fbxa-151 | Person_evidence | WBPerson655 | |||
Sequence_name | ZC47.7 | ||||||
Molecular_name | ZC47.7 | ||||||
ZC47.7.1 | |||||||
CE15008 | |||||||
Other_name | CELE_ZC47.7 | Accession_evidence | NDB | BX284603 | |||
Public_name | fbxa-151 | ||||||
DB_info | Database | AceView | gene | 3C352 | |||
WormQTL | gene | WBGene00013840 | |||||
WormFlux | gene | WBGene00013840 | |||||
NDB | locus_tag | CELE_ZC47.7 | |||||
Panther | gene | CAEEL|WormBase=WBGene00013840|UniProtKB=G5EDF8 | |||||
family | PTHR23015 | ||||||
NCBI | gene | 191061 | |||||
RefSeq | protein | NM_001384023.2 | |||||
TREEFAM | TREEFAM_ID | TF322006 | |||||
TrEMBL | UniProtAcc | G5EDF8 | |||||
UniProt_GCRP | UniProtAcc | G5EDF8 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxa | ||||||
Allele (28) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00013998 | ||||||
Ortholog | WBGene00034189 | Caenorhabditis briggsae | From_analysis | OMA | |||
CSP28.g15362 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||
chrIII_pilon.g6912 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
chrIII_pilon.g6914 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00065925 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||
Paralog (223) | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Involved in innate immune response. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | ZC47.7 | |||||
Corresponding_transcript | ZC47.7.1 | ||||||
Associated_feature | WBsf991265 | ||||||
Experimental_info | RNAi_result (11) | ||||||
Expr_pattern | Expr1162389 | ||||||
Drives_construct | WBCnstr00029511 | ||||||
Construct_product | WBCnstr00029511 | ||||||
Microarray_results | SMD_ZC47.1 | ||||||
SMD_ZC47.7 | |||||||
176212_at | |||||||
Expression_cluster (90) | |||||||
Interaction (40) | |||||||
Map_info | Map | III | Position | -22.5736 | |||
Positive | Positive_clone | ZC47 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00012854 | ||||||
WBPaper00041771 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
[200225 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-22.5737) | |||||||
[200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-22.5752) | |||||||
Method | Gene |