WormBase Tree Display for Gene: WBGene00013838

WBGene00013838 SMap: S_parent: Sequence: ZC47
  Identity: Version: 2
    Name: CGC_name: fbxa-31 Person_evidence: WBPerson655
      Sequence_name: ZC47.5
      Molecular_name: ZC47.5
        ZC47.5.1
        CE15004
      Other_name: CELE_ZC47.5 Accession_evidence: NDB BX284603
      Public_name: fbxa-31
    DB_info: Database: AceView gene 3C356
        WormQTL gene WBGene00013838
        WormFlux gene WBGene00013838
        NDB locus_tag CELE_ZC47.5
        Panther gene CAEEL|WormBase=WBGene00013838|UniProtKB=A4F330
          family PTHR23015
        NCBI gene 191059
        RefSeq protein NM_064963.7
        TREEFAM TREEFAM_ID TF322006
        TrEMBL UniProtAcc A4F330
        UniProt_GCRP UniProtAcc A4F330
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Dec 2005 15:18:56 WBPerson2970 Name_change: CGC_name: fbxa-31
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (138)
    RNASeq_FPKM (74)
    Ortholog (44)
    Paralog (225)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in ASER; head mesodermal cell; and intestine based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including eat-2; elt-2; and npr-1 based on microarray and RNA-seq studies. Is affected by thirteen chemicals including methylmercuric chloride; D-glucopyranose; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZC47.5
    Corresponding_transcript: ZC47.5.1
    Other_sequence: MJ00516
      ASC02157_3
      JI217681.1
      BM00895
      GO252091.1
      JI220210.1
      GT570878.1
      ASC04173_1
      HS01085
    Associated_feature: WBsf226201
  Experimental_info: RNAi_result: WBRNAi00058950 Inferred_automatically: RNAi_primary
      WBRNAi00006181 Inferred_automatically: RNAi_primary
      WBRNAi00021716 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1162387
      Expr2011538
      Expr2029775
    Drives_construct: WBCnstr00029513
    Construct_product: WBCnstr00029513
    Microarray_results (12)
    Expression_cluster (133)
    Interaction: WBInteraction000232322
      WBInteraction000271095
      WBInteraction000373913
      WBInteraction000385682
      WBInteraction000432088
      WBInteraction000546932
  Map_info: Map: III Position: -22.5698 Error: 0.001471
    Positive: Positive_clone: ZC47 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene