WormBase Tree Display for Gene: WBGene00013567
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| WBGene00013567 | SMap | S_parent | Sequence | Y75B12B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y75B12B.1 | |||||||
| Molecular_name (11) | |||||||||
| Other_name | CELE_Y75B12B.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | Y75B12B.1 | ||||||||
| DB_info | Database | AceView | gene | 5P663 | |||||
| WormQTL | gene | WBGene00013567 | |||||||
| WormFlux | gene | WBGene00013567 | |||||||
| NDB | locus_tag | CELE_Y75B12B.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013567|UniProtKB=C8TDI7 | |||||||
| family | PTHR23015 | ||||||||
| NCBI | gene | 190716 | |||||||
| RefSeq | protein | NM_001269727.3 | |||||||
| NM_001373163.2 | |||||||||
| NM_001269726.2 | |||||||||
| TrEMBL | UniProtAcc | Q9XWB8 | |||||||
| C8TDI7 | |||||||||
| H2KMK2 | |||||||||
| UniProt_GCRP | UniProtAcc | C8TDI7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (25) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00078861 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | |||||
| WBGene00084345 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WBGene00065773 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| chrV_pilon.g16725 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (211) | |||||||||
| Structured_description | Concise_description | Y75B12B.1 encodes a probable transposase, with many C. elegans paralogsand distant similarity to rotifer and insect transposases; Y75B12B.1 hasno known function in mass RNAi assays; Y75B12B.1 mRNA is stabilized bybound GLD-1. | Paper_evidence | WBPaper00006534 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 07 Apr 2007 00:00:00 | ||||||||
| Automated_description | Enriched in germ line; neurons; and retrovesicular ganglion based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; dpy-10; and daf-12 based on microarray; tiling array; and RNA-seq studies. Is affected by eight chemicals including rotenone; manganese chloride; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain and HTH domain in Mos1 transposase. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y75B12B.1a | |||||||
| Y75B12B.1b | |||||||||
| Y75B12B.1c | |||||||||
| Corresponding_CDS_history | Y75B12B.1:wp156 | ||||||||
| Corresponding_transcript | Y75B12B.1a.1 | ||||||||
| Y75B12B.1a.2 | |||||||||
| Y75B12B.1a.3 | |||||||||
| Y75B12B.1b.1 | |||||||||
| Y75B12B.1c.1 | |||||||||
| Associated_feature | WBsf1002253 | ||||||||
| WBsf1020991 | |||||||||
| WBsf233008 | |||||||||
| WBsf233009 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00021426 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00058419 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062473 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037834 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092488 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr16338 | ||||||||
| Expr1023086 | |||||||||
| Expr1036063 | |||||||||
| Expr1161837 | |||||||||
| Expr2008400 | |||||||||
| Expr2026641 | |||||||||
| Drives_construct | WBCnstr00029598 | ||||||||
| WBCnstr00042917 | |||||||||
| Construct_product | WBCnstr00029598 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (152) | |||||||||
| SAGE_tag | SAGE:tgttctctacgaggtgt | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:tgcgaaggaaggctgga | Strand | Antisense | |||||||
| SAGE:ttttcttccggattttt | Strand | Antisense | |||||||
| SAGE:ttttcttccg | Strand | Antisense | |||||||
| SAGE:tgcgaaggaa | Strand | Antisense | |||||||
| SAGE:cataatcgggaattcga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:atttgtgtctcgatatg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:atttgtgtct | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ggaaaaccagggaaaga | Strand | Antisense | |||||||
| SAGE:cataatcggg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (221) | |||||||||
| Map_info | Positive | Positive_clone | Y75B12B | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 7.50751 | |||||||
| Reference | WBPaper00006534 | ||||||||
| Method | Gene |
