WormBase Tree Display for Gene: WBGene00013529
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| WBGene00013529 | SMap | S_parent | Sequence | Y73F8A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | gtf-2H4 | Person_evidence | WBPerson1684 | |||||
| Sequence_name | Y73F8A.24 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | gft-2H4 | ||||||||
| CELE_Y73F8A.24 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | gtf-2H4 | ||||||||
| DB_info | Database | AceView | gene | 4Q210 | |||||
| WormQTL | gene | WBGene00013529 | |||||||
| WormFlux | gene | WBGene00013529 | |||||||
| NDB | locus_tag | CELE_Y73F8A.24 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013529|UniProtKB=K8F7X5 | |||||||
| family | PTHR13152 | ||||||||
| NCBI | gene | 178431 | |||||||
| RefSeq | protein | NM_001268934.2 | |||||||
| NM_001276895.4 | |||||||||
| NM_001276896.3 | |||||||||
| NM_001268935.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF300879 | |||||||
| TrEMBL | UniProtAcc | K8ESJ1 | |||||||
| Q9NA35 | |||||||||
| K8F7X5 | |||||||||
| D3NQB3 | |||||||||
| UniProt_GCRP | UniProtAcc | K8F7X5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 03 Jan 2021 23:24:01 | WBPerson1983 | Name_change | CGC_name | gft-2H4 | ||||
| 3 | 09 Dec 2021 11:50:30 | WBPerson1983 | Name_change | CGC_name | gtf-2H4 | ||||
| Other_name | gft-2H4 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gtf | ||||||||
| Allele (264) | |||||||||
| Strain | WBStrain00001838 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP4582 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Predicted to enable double-stranded DNA binding activity. Predicted to be involved in nucleotide-excision repair. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIH core complex and transcription factor TFIIH holo complex. Expressed in head and tail. Is an ortholog of human GTF2H4 (general transcription factor IIH subunit 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y73F8A.24a | |||||||
| Y73F8A.24b | |||||||||
| Y73F8A.24c | |||||||||
| Y73F8A.24d | |||||||||
| Corresponding_CDS_history | Y73F8A.24:wp92 | ||||||||
| Corresponding_transcript | Y73F8A.24a.1 | ||||||||
| Y73F8A.24b.1 | |||||||||
| Y73F8A.24c.1 | |||||||||
| Y73F8A.24d.1 | |||||||||
| Other_sequence (58) | |||||||||
| Associated_feature | WBsf034305 | ||||||||
| WBsf998723 | |||||||||
| WBsf998724 | |||||||||
| WBsf1018761 | |||||||||
| WBsf231248 | |||||||||
| Transcription_factor | WBTranscriptionFactor000576 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00058391 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037820 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram991 | ||||||||
| Expr7121 | |||||||||
| Expr1028673 | |||||||||
| Expr1036039 | |||||||||
| Expr1161811 | |||||||||
| Expr2008387 | |||||||||
| Expr2026629 | |||||||||
| Drives_construct | WBCnstr00002632 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (79) | |||||||||
| Interaction (27) | |||||||||
| Map_info | Map | IV | Position | 14.052 | |||||
| Positive | Positive_clone | Y73F8A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062203 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
