WormBase Tree Display for Gene: WBGene00013238
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| WBGene00013238 | SMap | S_parent | Sequence | Y56A3A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | trap-4 | |||||||
| Sequence_name | Y56A3A.21 | ||||||||
| Molecular_name | Y56A3A.21 | ||||||||
| Y56A3A.21.1 | |||||||||
| CE22589 | |||||||||
| Other_name | CELE_Y56A3A.21 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | trap-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Oct 2007 11:57:48 | WBPerson2970 | Name_change | CGC_name | trap-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trap | ||||||||
| Allele (21) | |||||||||
| Strain | WBStrain00055385 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00098697 | ||||||||
| 00098698 | |||||||||
| 00098699 | |||||||||
| 00098700 | |||||||||
| 00098701 | |||||||||
| 00098702 | |||||||||
| 00120139 | |||||||||
| 00120140 | |||||||||
| Contained_in_operon | CEOP3744 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Automated_description | Predicted to be located in endomembrane system. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iy. Is an ortholog of human SSR4 (signal sequence receptor subunit 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080574 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11326) | ||||
| Molecular_info | Corresponding_CDS | Y56A3A.21 | |||||||
| Corresponding_transcript | Y56A3A.21.1 | ||||||||
| Other_sequence (44) | |||||||||
| Associated_feature | WBsf645645 | ||||||||
| WBsf659593 | |||||||||
| WBsf659594 | |||||||||
| WBsf659595 | |||||||||
| WBsf981608 | |||||||||
| WBsf225873 | |||||||||
| WBsf225874 | |||||||||
| WBsf225875 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1017149 | ||||||||
| Expr1035896 | |||||||||
| Expr1161009 | |||||||||
| Expr2017484 | |||||||||
| Expr2035623 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (155) | |||||||||
| Interaction (91) | |||||||||
| Map_info | Map | III | Position | 13.4839 | Error | 0.005378 | |||
| Positive | Positive_clone | Y56A3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028984 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061045 | |||||||||
| WBPaper00065275 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
