WormBase Tree Display for Gene: WBGene00013236

WBGene00013236 SMap: S_parent: Sequence: Y56A3A
  Identity: Version: 2
    Name: CGC_name: znf-593 Person_evidence: WBPerson260
      Sequence_name: Y56A3A.18
      Molecular_name: Y56A3A.18
        Y56A3A.18.1
        CE22586
      Other_name: CELE_Y56A3A.18 Accession_evidence: NDB BX284603
      Public_name: znf-593
    DB_info: Database: AceView gene 3N8
        WormQTL gene WBGene00013236
        WormFlux gene WBGene00013236
        NDB locus_tag CELE_Y56A3A.18
        Panther gene CAEEL|WormBase=WBGene00013236|UniProtKB=Q9U239
          family PTHR46095
        NCBI gene 176624
        RefSeq protein NM_067151.7
        SwissProt UniProtAcc Q9U239
        TREEFAM TREEFAM_ID TF315114
        UniProt_GCRP UniProtAcc Q9U239
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 03 Jan 2021 23:31:38 WBPerson1983 Name_change: CGC_name: znf-593
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: znf
    Allele (31)
    Strain: WBStrain00002514
    RNASeq_FPKM (74)
    GO_annotation: 00098703
      00098704
      00098705
      00098706
      00098707
      00098708
    Contained_in_operon: CEOP3740
    Ortholog (35)
    Paralog: WBGene00013237 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018151 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: Y56A3A.18 encodes an ortholog of S. cerevisiae BUD20 that may suppress tumorous growth in the germ line by ensuring robust larval germline proliferation; like PRO-1, -2, and -3, Y56A3A.18 is thought to be required for ribosome biogenesis, suggesting a link between biogenesis in the distal sheath and control of cell division in the germ line. Paper_evidence: WBPaper00028280
            WBPaper00028934
          Curator_confirmed: WBPerson567
          Date_last_updated: 23 Apr 2008 00:00:00
      Automated_description: Predicted to enable metal ion binding activity. Predicted to be involved in ribosome biogenesis. Predicted to be located in cytoplasm and nucleus. Expressed in head. Is an ortholog of human ZNF593 (zinc finger protein 593). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y56A3A.18
    Corresponding_transcript: Y56A3A.18.1
    Other_sequence (17)
    Associated_feature: WBsf034294
      WBsf978721
      WBsf994529
      WBsf994530
      WBsf227614
    Transcription_factor: WBTranscriptionFactor001107
  Experimental_info: RNAi_result (17)
    Expr_pattern: Expr7068
      Expr1028172
      Expr1035894
      Expr1161005
      Expr2007998
      Expr2026239
    Drives_construct: WBCnstr00003094
    Microarray_results (19)
    Expression_cluster (129)
    Interaction (177)
  Map_info: Map: III Position: 13.4312
    Positive: Positive_clone: Y56A3A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027740
    WBPaper00028280
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene