WormBase Tree Display for Gene: WBGene00013197
expand all nodes | collapse all nodes | view schema
| WBGene00013197 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ttm-5 | Paper_evidence | WBPaper00038231 | |||||
| Person_evidence | WBPerson26 | ||||||||
| Sequence_name | Y54E5A.1 | ||||||||
| Molecular_name | Y54E5A.1 | ||||||||
| Y54E5A.1.1 | |||||||||
| CE28791 | |||||||||
| Y54E5A.1.2 | |||||||||
| Other_name | Y105E8B.o | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y54E5A.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | ttm-5 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 26 Apr 2011 13:31:47 | WBPerson2970 | Name_change | CGC_name | ttm-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ttm | ||||||||
| Allele (64) | |||||||||
| Strain | WBStrain00002797 | ||||||||
| WBStrain00032378 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00017996 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable sphingolipid delta-4 desaturase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 18. Is an ortholog of human DEGS1 (delta 4-desaturase, sphingolipid 1) and DEGS2 (delta 4-desaturase, sphingolipid 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070399 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13709) | ||||
| Molecular_info | Corresponding_CDS | Y54E5A.1 | |||||||
| Corresponding_CDS_history | Y54E5A.1:wp58 | ||||||||
| Corresponding_transcript | Y54E5A.1.1 | ||||||||
| Y54E5A.1.2 | |||||||||
| Other_sequence (38) | |||||||||
| Associated_feature | WBsf986209 | ||||||||
| WBsf220637 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00036493 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00088631 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004475 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004740 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116027 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057380 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00088738 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116537 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1613 | ||||||||
| Expr7042 | |||||||||
| Expr1018037 | |||||||||
| Expr1035865 | |||||||||
| Expr1160815 | |||||||||
| Expr2017573 | |||||||||
| Expr2035712 | |||||||||
| Drives_construct | WBCnstr00003324 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (193) | |||||||||
| Interaction | WBInteraction000032307 | ||||||||
| WBInteraction000032358 | |||||||||
| WBInteraction000032359 | |||||||||
| WBInteraction000339846 | |||||||||
| WBInteraction000513239 | |||||||||
| WBInteraction000513240 | |||||||||
| WBInteraction000513241 | |||||||||
| WBInteraction000541099 | |||||||||
| WBInteraction000541100 | |||||||||
| Map_info | Map | I | Position | 26.2109 | Error | 0.061874 | |||
| Positive | Positive_clone | Y54E5A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026800 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00046057 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062863 | |||||||||
| WBPaper00063285 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00064934 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
