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WormBase Tree Display for Gene: WBGene00013171

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Name Class

WBGene00013171SMapS_parentSequenceY53F4B
IdentityVersion1
NameSequence_nameY53F4B.25
Molecular_nameY53F4B.25a
Y53F4B.25a.1
CE48632
Y53F4B.25b
CE49101
Y53F4B.25b.1
Other_nameCELE_Y53F4B.25Accession_evidenceNDBBX284602
Public_nameY53F4B.25
DB_infoDatabaseAceViewgene2P429
WormQTLgeneWBGene00013171
WormFluxgeneWBGene00013171
NDBlocus_tagCELE_Y53F4B.25
PanthergeneCAEEL|WormBase=WBGene00013171|UniProtKB=U4PEB1
familyPTHR46705
NCBIgene175163
RefSeqproteinNM_001306624.3
NM_001306623.2
TrEMBLUniProtAccU4PEB1
U4PB30
UniProt_GCRPUniProtAccU4PEB1
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (134)
RNASeq_FPKM (74)
OrthologWBGene00026083Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00053310Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00130207Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00151371Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00191341Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00227022Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g7118Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9678Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12125Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g17063Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20245Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g16894Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP38.g16190Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g22646Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g26435Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g28914Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
Cang_2012_03_13_00115.g4770Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00178.g6300Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g5584Caenorhabditis nigoniFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02504Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g6360Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20314110Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g6664Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247322Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00091535Pristionchus pacificusFrom_analysisWormBase-Compara
Paralog (18)
Structured_descriptionAutomated_descriptionEnriched in ADE sheath cell; germline precursor cell; hypodermis; neurons; and retrovesicular ganglion based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including Ethanol; methylmercury hydroxide; and methylmercuric chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: DB module and Domain of unknown function DB.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY53F4B.25a
Y53F4B.25b
Corresponding_CDS_historyY53F4B.25:wp239
Corresponding_transcriptY53F4B.25a.1
Y53F4B.25b.1
Other_sequenceDAC02442_1
ASC05310_1
JI254898.1
CR06062
MJ05105
DA04527
CRC11508_1
Associated_featureWBsf644885
WBsf658460
WBsf990907
WBsf990908
WBsf990909
WBsf1013950
WBsf1013951
WBsf222539
Experimental_infoRNAi_resultWBRNAi00057279Inferred_automaticallyRNAi_primary
WBRNAi00020941Inferred_automaticallyRNAi_primary
WBRNAi00020940Inferred_automaticallyRNAi_primary
Expr_patternExpr1027613
Expr1035851
Expr1160717
Expr2007853
Expr2026094
Drives_constructWBCnstr00029739
Construct_productWBCnstr00029739
Microarray_results (21)
Expression_cluster (199)
Map_infoPositivePositive_cloneY53F4BInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII24.1135
MethodGene