WormBase Tree Display for Gene: WBGene00013168
expand all nodes | collapse all nodes | view schema
WBGene00013168 | SMap | S_parent | Sequence | Y53F4B | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | arp-1 | Person_evidence | WBPerson1562 | |||
Sequence_name | Y53F4B.22 | ||||||
Molecular_name | Y53F4B.22a | ||||||
Y53F4B.22a.1 | |||||||
CE35675 | |||||||
Y53F4B.22b | |||||||
CE48840 | |||||||
Y53F4B.22b.1 | |||||||
Other_name | CELE_Y53F4B.22 | Accession_evidence | NDB | BX284602 | |||
Public_name | arp-1 | ||||||
DB_info | Database | AceView | gene | 2P407 | |||
WormQTL | gene | WBGene00013168 | |||||
SignaLink | protein | WBGene00013168 | |||||
WormFlux | gene | WBGene00013168 | |||||
NDB | locus_tag | CELE_Y53F4B.22 | |||||
Panther | gene | CAEEL|WormBase=WBGene00013168|UniProtKB=Q9NA98 | |||||
family | PTHR11937 | ||||||
NCBI | gene | 175162 | |||||
RefSeq | protein | NM_064707.7 | |||||
NM_001306622.3 | |||||||
TrEMBL | UniProtAcc | Q9NA98 | |||||
U4PR70 | |||||||
UniProt_GCRP | UniProtAcc | Q9NA98 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Acquires_merge | WBGene00000194 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | arp | ||||||
Allele (56) | |||||||
Legacy_information | [C.elegansII] NMK. Sequence predicts protein with 50% homology to actin, 67% to vertebrate actin related protein. Antibody staining suggests located at cell division remnant. [RW] | ||||||
Strain | WBStrain00040378 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00095869 | ||||||
Ortholog (36) | |||||||
Paralog (11) | |||||||
Structured_description | Automated_description | Part of dynactin complex. Human ortholog(s) of this gene implicated in Down syndrome and colon cancer. Is an ortholog of human ACTR1A (actin related protein 1A). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:219 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:167) | ||
DOID:14250 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:167) | ||||
Molecular_info | Corresponding_CDS | Y53F4B.22a | |||||
Y53F4B.22b | |||||||
Corresponding_CDS_history | Y53F4B.22:wp109 | ||||||
Corresponding_transcript | Y53F4B.22a.1 | ||||||
Y53F4B.22b.1 | |||||||
Other_sequence (63) | |||||||
Associated_feature | WBsf644884 | ||||||
WBsf990898 | |||||||
WBsf990899 | |||||||
WBsf990900 | |||||||
WBsf1013947 | |||||||
WBsf222537 | |||||||
Experimental_info | RNAi_result (17) | ||||||
Expr_pattern | Expr8526 | ||||||
Expr1023806 | |||||||
Expr1035850 | |||||||
Expr1160714 | |||||||
Expr2009406 | |||||||
Expr2027642 | |||||||
Construct_product | WBCnstr00001390 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (92) | |||||||
Interaction (67) | |||||||
Map_info | Map | II | Position | 24.073 | Error | 0.044205 | |
Positive | Positive_clone | Y53F4B | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (12) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |