WormBase Tree Display for Gene: WBGene00013160
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| WBGene00013160 | SMap | S_parent | Sequence | Y53F4B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cmtr-1 | Person_evidence | WBPerson3778 | |||||
| WBPerson555 | |||||||||
| Sequence_name | Y53F4B.13 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_Y53F4B.13 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | cmtr-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 11 Mar 2021 09:37:10 | WBPerson1983 | Name_change | CGC_name | cmtr-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cmtr | ||||||||
| Allele (299) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Contained_in_operon | CEOP2656 | ||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00011281 | ||||||||
| WBGene00021502 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable mRNA (nucleoside-2'-O-)-methyltransferase activity. Predicted to be involved in 7-methylguanosine mRNA capping and cap1 mRNA methylation. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human CMTR1 (cap methyltransferase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y53F4B.13a | |||||||
| Y53F4B.13b | |||||||||
| Y53F4B.13c | |||||||||
| Y53F4B.13d | |||||||||
| Corresponding_CDS_history | Y53F4B.13:wp109 | ||||||||
| Y53F4B.13:wp230 | |||||||||
| Corresponding_transcript | Y53F4B.13a.1 | ||||||||
| Y53F4B.13b.1 | |||||||||
| Y53F4B.13c.1 | |||||||||
| Y53F4B.13d.1 | |||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf644881 | ||||||||
| WBsf658452 | |||||||||
| WBsf990882 | |||||||||
| WBsf222531 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr1011597 | ||||||||
| Expr1035844 | |||||||||
| Expr1160704 | |||||||||
| Expr2007843 | |||||||||
| Expr2026083 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (88) | |||||||||
| SAGE_tag | SAGE:gatccggtga | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:ataatatgcaacggctc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:acatccccgttatcctt | Strand | Antisense | |||||||
| SAGE:gatccggtgaatatcga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aaaatttggt | Strand | Antisense | |||||||
| SAGE:aaaatttggtcggcttc | Strand | Antisense | |||||||
| SAGE:gacgaaatcattcgaca | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (23) | |||||||||
| Map_info | Map | II | Position | 23.9559 | |||||
| Positive | Positive_clone | Y53F4B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
