WormBase Tree Display for Gene: WBGene00012889

WBGene00012889 SMap: S_parent: Sequence: Y45F10D
  Identity: Version: 2
    Name: CGC_name: icap-1 Person_evidence: WBPerson137
      Sequence_name: Y45F10D.10
      Molecular_name: Y45F10D.10a
        Y45F10D.10a.1
        CE41280
        Y45F10D.10b
        CE44556
        Y45F10D.10b.1
      Other_name: CELE_Y45F10D.10 Accession_evidence: NDB BX284604
      Public_name: icap-1
    DB_info: Database: AceView gene 4O550
        WormQTL gene WBGene00012889
        WormFlux gene WBGene00012889
        NDB locus_tag CELE_Y45F10D.10
        NCBI gene 189926
        RefSeq protein NM_001268829.4
            NM_001268828.2
        TREEFAM TREEFAM_ID TF105393
        TrEMBL UniProtAcc O62480
            D3NQ97
        UniProt_GCRP UniProtAcc O62480
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 09 Oct 2018 11:56:16 WBPerson1983 Name_change: CGC_name: icap-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: icap
    Allele (27)
    Strain: WBStrain00037193
    RNASeq_FPKM (74)
    GO_annotation: 00007372
    Contained_in_operon: CEOP4564
    Ortholog: WBGene00040950 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00157399 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00082089 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00074896 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00271142 Caenorhabditis briggsae From_analysis: WormBase-Compara
      CBOVI.g8879 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g6065 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP29.g3521 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g9648 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g5575 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g18957 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g8734 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16947 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-Y45F10D.10 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16378 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02066.g24688 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_013148 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrIV_pilon.g12379 Caenorhabditis elegans From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-051113-264 Danio rerio From_analysis: Inparanoid
            OrthoFinder
            OrthoInspector
      HGNC:23927 Homo sapiens From_analysis: OrthoFinder
            PhylomeDB
      MGI:1306802 Mus musculus From_analysis: OrthoFinder
            PhylomeDB
      RGD:1307810 Rattus norvegicus From_analysis: OrthoFinder
            PhylomeDB
    Structured_description: Automated_description: Predicted to be involved in integrin-mediated signaling pathway. Is an ortholog of human ITGB1BP1 (integrin subunit beta 1 binding protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y45F10D.10a
      Y45F10D.10b
    Corresponding_CDS_history: Y45F10D.10:wp177
    Corresponding_transcript: Y45F10D.10a.1
      Y45F10D.10b.1
    Associated_feature: WBsf652355
      WBsf231167
  Experimental_info: RNAi_result: WBRNAi00020607 Inferred_automatically: RNAi_primary
      WBRNAi00056595 Inferred_automatically: RNAi_primary
      WBRNAi00065068 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023112
      Expr1160062
      Expr2007546
      Expr2025782
    Drives_construct: WBCnstr00029798
    Construct_product: WBCnstr00029798
    Microarray_results (17)
    Expression_cluster (87)
    Interaction: WBInteraction000179777
      WBInteraction000560396
  Map_info: Map: IV Position: 10.8581
    Positive: Positive_clone: Y45F10D Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene