WormBase Tree Display for Gene: WBGene00012879

WBGene00012879 SMap: S_parent: Sequence: Y45F10C
  Identity: Version: 2
    Name: CGC_name: fbxa-215 Person_evidence: WBPerson655
      Sequence_name: Y45F10C.3
      Molecular_name: Y45F10C.3
        Y45F10C.3.1
        CE54509
      Other_name: CELE_Y45F10C.3 Accession_evidence: NDB BX284604
      Public_name: fbxa-215
    DB_info: Database: AceView gene 4O430
        WormQTL gene WBGene00012879
        WormFlux gene WBGene00012879
        NDB locus_tag CELE_Y45F10C.3
        Panther gene CAEEL|WormBase=WBGene00012879|UniProtKB=O62474
          family PTHR23015
        NCBI gene 178336
        RefSeq protein NM_070240.7
        TREEFAM TREEFAM_ID TF322006
        TrEMBL UniProtAcc A0A8S4Q9N7
        UniProt_GCRP UniProtAcc A0A8S4Q9N7
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Mar 2007 11:55:19 WBPerson2970 Name_change: CGC_name: fbxa-215
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (33)
    RNASeq_FPKM (74)
    Ortholog (37)
    Paralog (225)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in several structures, including carbon dioxide sensory neurons; germ line; germline precursor cell; head mesodermal cell; and pharyngeal muscle cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; dpy-10; and hsf-1 based on microarray; RNA-seq; and tiling array studies. Is affected by nine chemicals including manganese chloride; D-glucose; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y45F10C.3
    Corresponding_CDS_history: Y45F10C.3:wp282
    Corresponding_transcript: Y45F10C.3.1
    Other_sequence: CRC06572_1
      CR09489
    Associated_feature: WBsf652351
      WBsf231158
  Experimental_info: RNAi_result: WBRNAi00020603 Inferred_automatically: RNAi_primary
      WBRNAi00085814 Inferred_automatically: RNAi_primary
      WBRNAi00037092 Inferred_automatically: RNAi_primary
      WBRNAi00008022 Inferred_automatically: RNAi_primary
      WBRNAi00001604 Inferred_automatically: RNAi_primary
      WBRNAi00056591 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021735
      Expr1035696
      Expr1160059
      Expr2011523
      Expr2029760
    Drives_construct: WBCnstr00029804
    Construct_product: WBCnstr00029804
    Microarray_results (14)
    Expression_cluster (180)
    Interaction (268)
  Map_info: Map: IV Position: 10.55 Error: 0.001618
    Positive: Positive_clone: Y45F10C Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene