WormBase Tree Display for Gene: WBGene00012730
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| WBGene00012730 | Evidence | Paper_evidence | WBPaper00006308 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y39G8C | ||||||
| Identity | Version | 3 | |||||||
| Name | CGC_name | xrn-1 | |||||||
| Sequence_name | Y39G8C.1 | ||||||||
| Molecular_name | Y39G8C.1 | ||||||||
| Y39G8C.1.1 | |||||||||
| CE42924 | |||||||||
| Other_name | Y39G8C.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y39G8C.1 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | xrn-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 17 Sep 2004 10:21:40 | WBPerson1971 | Name_change | CGC_name | xrn-1 | ||||
| 3 | 18 Jul 2008 16:44:00 | WBPerson1983 | Event | Acquires_merge | WBGene00044055 | ||||
| Acquires_merge | WBGene00044055 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | xrn | ||||||||
| Allele (737) | |||||||||
| In_cluster | conserved_miRNA_siRNA_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Contained_in_operon | CEOP2724 | ||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00006964 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description (2) | |||||||||
| Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:30654) | ||||
| Molecular_info | Corresponding_CDS | Y39G8C.1 | |||||||
| Corresponding_CDS_history | Y39G8C.1:wp91 | ||||||||
| Y39G8C.1:wp193 | |||||||||
| Corresponding_transcript | Y39G8C.1.1 | ||||||||
| Other_sequence (12) | |||||||||
| Associated_feature | WBsf990619 | ||||||||
| WBsf990620 | |||||||||
| WBsf990621 | |||||||||
| WBsf1013768 | |||||||||
| WBsf1013769 | |||||||||
| WBsf1013770 | |||||||||
| WBsf222422 | |||||||||
| WBsf222423 | |||||||||
| Experimental_info | RNAi_result (25) | ||||||||
| Expr_pattern | Expr2827 | ||||||||
| Expr1028840 | |||||||||
| Expr1035633 | |||||||||
| Expr1159774 | |||||||||
| Expr2018110 | |||||||||
| Expr2036248 | |||||||||
| Drives_construct | WBCnstr00010975 | ||||||||
| Construct_product | WBCnstr00010975 | ||||||||
| Antibody | WBAntibody00002505 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (95) | |||||||||
| Interaction (331) | |||||||||
| Map_info | Map | II | Position | 22.401 | Error | 0.003133 | |||
| Positive | Positive_clone | Y39G8C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (19) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
