WormBase Tree Display for Gene: WBGene00012624
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WBGene00012624 | SMap | S_parent | Sequence | Y38H6C | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-150 | Person_evidence | WBPerson655 | |||||
Sequence_name | Y38H6C.11 | ||||||||
Molecular_name | Y38H6C.11 | ||||||||
Y38H6C.11.1 | |||||||||
CE19105 | |||||||||
Other_name | CELE_Y38H6C.11 | Accession_evidence | NDB | BX284605 | |||||
Public_name | fbxa-150 | ||||||||
DB_info | Database | AceView | gene | 5U995 | |||||
WormQTL | gene | WBGene00012624 | |||||||
WormFlux | gene | WBGene00012624 | |||||||
NDB | locus_tag | CELE_Y38H6C.11 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00012624|UniProtKB=Q9XX49 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 189692 | |||||||
RefSeq | protein | NM_075553.2 | |||||||
TREEFAM | TREEFAM_ID | TF315839 | |||||||
TrEMBL | UniProtAcc | Q9XX49 | |||||||
UniProt_GCRP | UniProtAcc | Q9XX49 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 01 Mar 2007 11:55:18 | WBPerson2970 | Name_change | CGC_name | fbxa-150 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (99) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00104140 | ||||||||
Ortholog | WBGene00057801 | Caenorhabditis remanei | From_analysis (3) | ||||||
WBGene00155764 | Caenorhabditis brenneri | From_analysis (3) | |||||||
WBGene00149321 | Caenorhabditis brenneri | From_analysis (3) | |||||||
WBGene00146220 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
WBGene00144343 | Caenorhabditis brenneri | From_analysis (2) | |||||||
Csp11.Scaffold630.g21620 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_04735.g33619 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_12957 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_019547 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
chrV_pilon.g18104 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (213) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Involved in innate immune response. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y38H6C.11 | |||||||
Corresponding_transcript | Y38H6C.11.1 | ||||||||
Associated_feature | WBsf647745 | ||||||||
Experimental_info | RNAi_result | WBRNAi00020313 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00036863 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00056062 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1022247 | ||||||||
Expr1159585 | |||||||||
Expr2011482 | |||||||||
Expr2029720 | |||||||||
Drives_construct | WBCnstr00029878 | ||||||||
Construct_product | WBCnstr00029878 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (169) | |||||||||
Interaction | WBInteraction000238769 | ||||||||
WBInteraction000400575 | |||||||||
WBInteraction000442866 | |||||||||
Map_info | Map | V | Position | 25.0075 | Error | 0.000432 | |||
Positive | Positive_clone | Y38H6C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |