WormBase Tree Display for Gene: WBGene00012538
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WBGene00012538 | SMap | S_parent | Sequence | Y37A1B | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | semo-1 | Person_evidence | WBPerson3185 | |||||
Sequence_name | Y37A1B.5 | ||||||||
Molecular_name | Y37A1B.5a | ||||||||
Y37A1B.5a.1 | |||||||||
CE19075 | |||||||||
Y37A1B.5b | |||||||||
CE44562 | |||||||||
Y37A1B.5b.1 | |||||||||
Y37A1B.5c | |||||||||
Other_name | CELE_Y37A1B.5 | Accession_evidence | NDB | BX284604 | |||||
Public_name | semo-1 | ||||||||
DB_info | Database | AceView | gene | 4O819 | |||||
WormQTL | gene | WBGene00012538 | |||||||
WormFlux | gene | WBGene00012538 | |||||||
NDB | locus_tag | CELE_Y37A1B.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00012538|UniProtKB=Q9XXF9 | |||||||
family | PTHR23300 | ||||||||
NCBI | gene | 178360 | |||||||
RefSeq | protein | NM_001268848.2 | |||||||
NM_001268849.3 | |||||||||
NR_131636.1 | |||||||||
TREEFAM | TREEFAM_ID | TF315241 | |||||||
TrEMBL | UniProtAcc | Q9XXF9 | |||||||
D3NQ99 | |||||||||
UniProt_GCRP | UniProtAcc | Q9XXF9 | |||||||
RNAcentral | URSid | URS00007667F5 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 10 Sep 2020 13:52:41 | WBPerson1983 | Name_change | CGC_name | semo-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | semo | ||||||||
Allele (143) | |||||||||
Possibly_affected_by | WBVar02157820 | ||||||||
Strain | WBStrain00001724 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00104342 | ||||||||
00104343 | |||||||||
00119630 | |||||||||
Ortholog (39) | |||||||||
Paralog | WBGene00011249 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Enables methanethiol oxidase activity. Expressed in hypodermal cell. Human ortholog(s) of this gene implicated in glaucoma. Is an ortholog of human SELENBP1 (selenium binding protein 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:1686 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10719) | ||||
Molecular_info | Corresponding_CDS | Y37A1B.5a | |||||||
Y37A1B.5b | |||||||||
Corresponding_transcript | Y37A1B.5c | ||||||||
Y37A1B.5a.1 | |||||||||
Y37A1B.5b.1 | |||||||||
Other_sequence | AE02579 | ||||||||
FK810050.1 | |||||||||
MH11084 | |||||||||
Dviv_isotig32421 | |||||||||
MH11085 | |||||||||
Dviv_isotig34417 | |||||||||
ASC04584_1 | |||||||||
ACC02036_1 | |||||||||
Hbac_isotig01329 | |||||||||
GW407756.1 | |||||||||
MAC02705_1 | |||||||||
Oden_isotig14033 | |||||||||
ASC23787_1 | |||||||||
Oden_isotig14032 | |||||||||
CSC01831_1 | |||||||||
FE929251.1 | |||||||||
MA01689 | |||||||||
AS01697 | |||||||||
AYC03606_1 | |||||||||
MAC00996_1 | |||||||||
MH01752 | |||||||||
MA00515 | |||||||||
ES409139.1 | |||||||||
Acan_isotig04212 | |||||||||
Oden_isotig26378 | |||||||||
ES744299.1 | |||||||||
ES740906.1 | |||||||||
AS07965 | |||||||||
CJC05464_1 | |||||||||
PSC04939_1 | |||||||||
MHC04659_1 | |||||||||
MHC03748_1 | |||||||||
JI169013.1 | |||||||||
Acan_isotig04213 | |||||||||
MJ02371 | |||||||||
HBC09572_1 | |||||||||
MJC01419_1 | |||||||||
FD517767.1 | |||||||||
ES742485.1 | |||||||||
Associated_feature | WBsf1018595 | ||||||||
WBsf229475 | |||||||||
Experimental_info | RNAi_result | WBRNAi00055856 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00020206 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (11) | |||||||||
Drives_construct | WBCnstr00002549 | ||||||||
WBCnstr00004373 | |||||||||
WBCnstr00019922 | |||||||||
WBCnstr00041572 | |||||||||
Construct_product | WBCnstr00041572 | ||||||||
Regulate_expr_cluster | WBPaper00058648:Y37A1B.5(RNAi)_downregulated | ||||||||
WBPaper00058648:Y37A1B.5(RNAi)_upregulated | |||||||||
Microarray_results (25) | |||||||||
Expression_cluster (270) | |||||||||
Interaction | WBInteraction000363177 | ||||||||
WBInteraction000388085 | |||||||||
WBInteraction000519376 | |||||||||
WBInteraction000549759 | |||||||||
WBInteraction000560231 | |||||||||
WBInteraction000574144 | |||||||||
WBInteraction000577964 | |||||||||
WBInteraction000578682 | |||||||||
WBInteraction000580822 | |||||||||
Map_info | Positive | Positive_clone | Y37A1B | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | IV | 11.2977 | |||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00058648 | |||||||||
WBPaper00061889 | |||||||||
WBPaper00062590 | |||||||||
WBPaper00062649 | |||||||||
WBPaper00062864 | |||||||||
WBPaper00065026 | |||||||||
WBPaper00065721 | |||||||||
Method | Gene |