WormBase Tree Display for Gene: WBGene00012538

WBGene00012538 SMap: S_parent: Sequence: Y37A1B
  Identity: Version: 2
    Name: CGC_name: semo-1 Person_evidence: WBPerson3185
      Sequence_name: Y37A1B.5
      Molecular_name: Y37A1B.5a
        Y37A1B.5a.1
        CE19075
        Y37A1B.5b
        CE44562
        Y37A1B.5b.1
        Y37A1B.5c
      Other_name: CELE_Y37A1B.5 Accession_evidence: NDB BX284604
      Public_name: semo-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 10 Sep 2020 13:52:41 WBPerson1983 Name_change: CGC_name: semo-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: semo
    Allele (143)
    Possibly_affected_by: WBVar02157820
    Strain: WBStrain00001724
    RNASeq_FPKM (74)
    GO_annotation: 00104342
      00104343
      00119630
    Ortholog: WBGene00038121 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00072483 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00154525 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00158842 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00122294 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00075072 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00149348 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00158689 Caenorhabditis brenneri From_analysis: WormBase-Compara
      CBOVI.g11276 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g15916 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g2708 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g7484 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g3501 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g8047 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17084 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g20162 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9386 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g9818 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00408.g10443 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-Y37A1B.5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14259 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14278 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01616.g22091 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_14640 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_013075 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03111 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g17007 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40273700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g10993 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrIV_pilon.g12415 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00209329 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00258088 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0038115 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1436 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10719 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:96825 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:104859 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:620571 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:9292945 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00011249 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Enables methanethiol oxidase activity. Expressed in hypodermal cell. Human ortholog(s) of this gene implicated in glaucoma. Is an ortholog of human SELENBP1 (selenium binding protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:1686 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10719)
  Molecular_info: Corresponding_CDS: Y37A1B.5a
      Y37A1B.5b
    Corresponding_transcript: Y37A1B.5c
      Y37A1B.5a.1
      Y37A1B.5b.1
    Other_sequence (39)
    Associated_feature: WBsf1018595
      WBsf229475
  Experimental_info: RNAi_result: WBRNAi00055856 Inferred_automatically: RNAi_primary
      WBRNAi00020206 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1486
      Expr6929
      Expr6930
      Expr14887
      Expr14888
      Expr16480
      Expr1022141
      Expr1035547
      Expr1159385
      Expr2007236
      Expr2025466
    Drives_construct: WBCnstr00002549
      WBCnstr00004373
      WBCnstr00019922
      WBCnstr00041572
    Construct_product: WBCnstr00041572
    Regulate_expr_cluster: WBPaper00058648:Y37A1B.5(RNAi)_downregulated
      WBPaper00058648:Y37A1B.5(RNAi)_upregulated
    Microarray_results (25)
    Expression_cluster (270)
    Interaction: WBInteraction000363177
      WBInteraction000388085
      WBInteraction000519376
      WBInteraction000549759
      WBInteraction000560231
      WBInteraction000574144
      WBInteraction000577964
      WBInteraction000578682
      WBInteraction000580822
  Map_info: Positive: Positive_clone: Y37A1B Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 11.2977
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00058648
    WBPaper00061889
    WBPaper00062590
    WBPaper00062649
    WBPaper00062864
    WBPaper00065026
    WBPaper00065721
  Method: Gene