WormBase Tree Display for Gene: WBGene00012320
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| WBGene00012320 | SMap | S_parent | Sequence | W07A8 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | srxa-3 | Person_evidence | WBPerson522 | ||||||
| Sequence_name | W07A8.4 | |||||||||
| Molecular_name | W07A8.4 | |||||||||
| Other_name | CELE_W07A8.4 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | srxa-3 | |||||||||
| DB_info | Database | AceView | gene | 5V205 | ||||||
| WormQTL | gene | WBGene00012320 | ||||||||
| NDB | locus_tag | CELE_W07A8.4 | ||||||||
| NCBI | gene | 13218913 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | |||
| 2 | 18 Feb 2005 15:37:03 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| 3 | 02 Mar 2005 17:12:51 | WBPerson2970 | Name_change | CGC_name | srxa-3 | |||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | srxa | |||||||||
| Allele (31) | ||||||||||
| Strain | WBStrain00003214 | |||||||||
| RNASeq_FPKM (74) | ||||||||||
| Paralog | WBGene00010153 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Automated_description | Enriched in sensory neurons based on RNA-seq studies. Is affected by dpy-21 and acs-3 based on RNA-seq and microarray studies. Is affected by Ethanol based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | W07A8.4:wp140 | ||||||||
| Corresponding_pseudogene | W07A8.4 | |||||||||
| Experimental_info | Expr_pattern | Expr6849 | ||||||||
| Drives_construct | WBCnstr00003689 | |||||||||
| Microarray_results | SMD_W07A8.4 | |||||||||
| 179399_at | ||||||||||
| A_12_P113335 | ||||||||||
| Aff_W07A8.4 | ||||||||||
| GPL19516_CGZ0038692 | ||||||||||
| GPL21109_W07A8.4 | ||||||||||
| GPL3518_CE20160 | ||||||||||
| GPL9450_W07A8.4 | ||||||||||
| cea2.i.45909 | ||||||||||
| Expression_cluster | WBPaper00041954:ethanol_upregulated | |||||||||
| WBPaper00050370:dpy-21(e428)_L3_downregulated | ||||||||||
| WBPaper00050726:OsmoticStress_regulated_Food | ||||||||||
| WBPaper00050726:OsmoticStress_regulated_NoFood | ||||||||||
| WBPaper00059598:HeatShock_upregulated | ||||||||||
| WBPaper00060661:sensory-neuron_enriched | ||||||||||
| WBPaper00061527:srj-42-srw-113 | ||||||||||
| WBPaper00045015:acs-3(ft5)_downregulated | ||||||||||
| Map_info | Map | V | Position | 25.0375 | Error | 0.000417 | ||||
| Positive | Positive_clone | W07A8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
