WormBase Tree Display for Gene: WBGene00012178
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| WBGene00012178 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | glb-27 | Paper_evidence | WBPaper00031066 | |||||
| Person_evidence | WBPerson1540 | ||||||||
| Sequence_name | W01C9.5 | ||||||||
| Molecular_name | W01C9.5a | ||||||||
| W01C9.5a.1 | |||||||||
| CE02371 | |||||||||
| W01C9.5b | |||||||||
| CE50206 | |||||||||
| W01C9.5c | |||||||||
| CE50156 | |||||||||
| W01C9.5b.1 | |||||||||
| W01C9.5c.1 | |||||||||
| Other_name | CELE_W01C9.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | glb-27 | ||||||||
| DB_info | Database | AceView | gene | 2I838 | |||||
| WormQTL | gene | WBGene00012178 | |||||||
| WormFlux | gene | WBGene00012178 | |||||||
| NDB | locus_tag | CELE_W01C9.5 | |||||||
| Panther | gene | CAEEL|WormBase=W01C9.5b|UniProtKB=A0A0K3ATU3 | |||||||
| family | PTHR46458 | ||||||||
| NCBI | gene | 189091 | |||||||
| RefSeq | protein | NM_001313555.3 | |||||||
| NM_063405.4 | |||||||||
| NM_001313670.4 | |||||||||
| TrEMBL | UniProtAcc | A0A0K3AU27 | |||||||
| Q23117 | |||||||||
| A0A0K3ATU3 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A0K3ATU3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Oct 2007 15:16:42 | WBPerson2970 | Name_change | CGC_name | glb-27 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | glb | ||||||||
| Allele (115) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00001176 | ||||||||
| 00001177 | |||||||||
| 00001178 | |||||||||
| 00001179 | |||||||||
| 00001180 | |||||||||
| 00001181 | |||||||||
| 00119358 | |||||||||
| 00119359 | |||||||||
| Ortholog (24) | |||||||||
| Paralog (16) | |||||||||
| Structured_description | Concise_description | glb-27 encodes a globin whose expression is probably induced by anoxia in a HIF-1-dependent manner; glb-27 transcription is higher in L3 and dauers than in young adults; glb-27 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00025067 | |||||
| WBPaper00031066 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Dec 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable oxygen binding activity and oxygen carrier activity. Predicted to be involved in oxygen transport and response to hypoxia. Expressed in head neurons; lateral nerve cord; tail neurons; ventral cord neurons; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W01C9.5a | |||||||
| W01C9.5b | |||||||||
| W01C9.5c | |||||||||
| Corresponding_transcript | W01C9.5a.1 | ||||||||
| W01C9.5b.1 | |||||||||
| W01C9.5c.1 | |||||||||
| Other_sequence | Dviv_isotig17365 | ||||||||
| MH00896 | |||||||||
| Acan_isotig13374 | |||||||||
| FC555510.1 | |||||||||
| Oden_isotig27023 | |||||||||
| MHC02583_1 | |||||||||
| Dviv_isotig17366 | |||||||||
| JI180198.1 | |||||||||
| Oden_isotig25147 | |||||||||
| Associated_feature | WBsf665827 | ||||||||
| WBsf988764 | |||||||||
| WBsf223512 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019466 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054522 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036148 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4890 | ||||||||
| Expr8507 | |||||||||
| Expr1018320 | |||||||||
| Expr1158067 | |||||||||
| Expr2012063 | |||||||||
| Expr2030299 | |||||||||
| Drives_construct | WBCnstr00013336 | ||||||||
| WBCnstr00030084 | |||||||||
| Construct_product | WBCnstr00030084 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (129) | |||||||||
| Interaction (66) | |||||||||
| Map_info | Map | II | Position | 0.815533 | Error | 8.5e-05 | |||
| Positive | Positive_clone | W01C9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031066 | ||||||||
| WBPaper00032254 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00060661 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
