WormBase Tree Display for Gene: WBGene00012144
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| WBGene00012144 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lgmn-1 | Person_evidence | WBPerson56 | |||||
| Author_evidence | H. Kadota | ||||||||
| Sequence_name | T28H10.3 | ||||||||
| Molecular_name | T28H10.3 | ||||||||
| T28H10.3.1 | |||||||||
| CE14367 | |||||||||
| Other_name | CELE_T28H10.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | lgmn-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 11 Mar 2021 09:37:10 | WBPerson1983 | Name_change | CGC_name | lgmn-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lgmn | ||||||||
| Allele | WBVar00009180 | ||||||||
| WBVar01499547 | |||||||||
| WBVar01055456 | |||||||||
| WBVar01055457 | |||||||||
| WBVar01055458 | |||||||||
| WBVar01055459 | |||||||||
| WBVar01055460 | |||||||||
| WBVar01055461 | |||||||||
| WBVar01055462 | |||||||||
| WBVar01055463 | |||||||||
| WBVar01055464 | |||||||||
| WBVar01055465 | |||||||||
| WBVar01055466 | |||||||||
| WBVar00251584 | |||||||||
| WBVar01055467 | |||||||||
| WBVar01055468 | |||||||||
| WBVar01055469 | |||||||||
| WBVar01055470 | |||||||||
| WBVar01055471 | |||||||||
| WBVar01055472 | |||||||||
| WBVar01499013 | |||||||||
| WBVar01055473 | |||||||||
| WBVar01055474 | |||||||||
| WBVar01055475 | |||||||||
| WBVar01868080 | |||||||||
| WBVar01500212 | |||||||||
| WBVar00472964 | |||||||||
| WBVar01500213 | |||||||||
| WBVar00472965 | |||||||||
| WBVar00472966 | |||||||||
| WBVar00472967 | |||||||||
| WBVar00472968 | |||||||||
| WBVar00472969 | |||||||||
| WBVar00472970 | |||||||||
| WBVar01499299 | |||||||||
| WBVar00472971 | |||||||||
| WBVar02124251 | |||||||||
| WBVar01499316 | |||||||||
| WBVar01462158 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00011482 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable cysteine-type endopeptidase activity. Involved in PERK-mediated unfolded protein response. Predicted to be located in vacuole. Is an ortholog of human LGMN (legumain). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T28H10.3 | |||||||
| Corresponding_transcript | T28H10.3.1 | ||||||||
| Other_sequence (139) | |||||||||
| Associated_feature | WBsf647381 | ||||||||
| WBsf661908 | |||||||||
| WBsf232663 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00076725 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054448 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089172 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001579 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036107 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019417 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10444 | ||||||||
| Expr10445 | |||||||||
| Expr1010916 | |||||||||
| Expr1035372 | |||||||||
| Expr1157992 | |||||||||
| Expr2006638 | |||||||||
| Expr2024855 | |||||||||
| Drives_construct | WBCnstr00015333 | ||||||||
| WBCnstr00030108 | |||||||||
| Construct_product | WBCnstr00022837 | ||||||||
| WBCnstr00030108 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (345) | |||||||||
| Interaction (162) | |||||||||
| Map_info | Map | V | Position | 4.43767 | |||||
| Positive | Positive_clone | T28H10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059755 | |||||||||
| WBPaper00062690 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
