WormBase Tree Display for Gene: WBGene00012030
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| WBGene00012030 | SMap | S_parent | Sequence | T25G3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | T25G3.3 | |||||||
| Molecular_name | T25G3.3 | ||||||||
| T25G3.3.1 | |||||||||
| CE30306 | |||||||||
| Other_name | CELE_T25G3.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | T25G3.3 | ||||||||
| DB_info | Database | AceView | gene | 1I137 | |||||
| WormQTL | gene | WBGene00012030 | |||||||
| WormFlux | gene | WBGene00012030 | |||||||
| NDB | locus_tag | CELE_T25G3.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012030|UniProtKB=Q22792 | |||||||
| family | PTHR12746 | ||||||||
| NCBI | gene | 3565801 | |||||||
| RefSeq | protein | NM_059713.11 | |||||||
| TREEFAM | TREEFAM_ID | TF105744 | |||||||
| TrEMBL | UniProtAcc | Q22792 | |||||||
| UniProt_GCRP | UniProtAcc | Q22792 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (20) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00076407 | ||||||||
| 00076408 | |||||||||
| 00076409 | |||||||||
| 00076410 | |||||||||
| 00076411 | |||||||||
| 00076412 | |||||||||
| 00076413 | |||||||||
| 00076414 | |||||||||
| 00076415 | |||||||||
| 00119219 | |||||||||
| Contained_in_operon | CEOP1400 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | T25G3.3 encodes an ortholog of S. cerevisiae NMD3; by orthology, T25G3.3is predicted to help export large ribosomal subunits from the nucleus toIMB-4; T25G3.3 transcripts are enriched during oogenesis, and T25G3.3 ispredicted to be coexpressed in an operon with chs-1; however, there isno obvious connection between T25G3.3 and CHS-1 function, so theircoexpression may simply reflect their both being required for oogenesis;T25G3.3 is required for viability, growth, and fertility in mass RNAiassays. | Paper_evidence | WBPaper00004402 | |||||
| WBPaper00005599 | |||||||||
| WBPaper00006390 | |||||||||
| WBPaper00006395 | |||||||||
| WBPaper00025054 | |||||||||
| WBPaper00026721 | |||||||||
| WBPaper00029234 | |||||||||
| WBPaper00029235 | |||||||||
| WBPaper00029236 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 09 Apr 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in ribosomal large subunit export from nucleus. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human NMD3 (NMD3 ribosome export adaptor). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T25G3.3 | |||||||
| Corresponding_CDS_history | T25G3.3:wp72 | ||||||||
| Corresponding_transcript | T25G3.3.1 | ||||||||
| Other_sequence (43) | |||||||||
| Associated_feature | WBsf643463 | ||||||||
| WBsf656539 | |||||||||
| WBsf656540 | |||||||||
| WBsf984224 | |||||||||
| WBsf1010110 | |||||||||
| WBsf218025 | |||||||||
| WBsf218026 | |||||||||
| WBsf218027 | |||||||||
| Experimental_info | RNAi_result (26) | ||||||||
| Expr_pattern | Expr1027631 | ||||||||
| Expr1035319 | |||||||||
| Expr1157707 | |||||||||
| Expr2006515 | |||||||||
| Expr2024734 | |||||||||
| Drives_construct | WBCnstr00030186 | ||||||||
| Construct_product | WBCnstr00030186 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (115) | |||||||||
| Interaction (246) | |||||||||
| Map_info | Positive | Positive_clone | T25G3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | 2.14325 | |||||||
| Reference | WBPaper00034662 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Method | Gene |
