WormBase Tree Display for Gene: WBGene00012007

WBGene00012007 SMap: S_parent: Sequence: T25B9
  Identity: Version: 1
    Name: Sequence_name: T25B9.1
      Molecular_name: T25B9.1
        T25B9.1.1
        CE52909
      Other_name: CELE_T25B9.1 Accession_evidence: NDB BX284604
      Public_name: T25B9.1
    DB_info: Database: AceView gene 4L514
        WormQTL gene WBGene00012007
        WormFlux gene WBGene00012007
        NDB locus_tag CELE_T25B9.1
        Panther gene CAEEL|WormBase=WBGene00012007|UniProtKB=Q22768
          family PTHR13693
        NCBI gene 177968
        RefSeq protein NM_069590.8
        TREEFAM TREEFAM_ID TF105923
        TrEMBL UniProtAcc Q22768
        UniProt_GCRP UniProtAcc Q22768
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (22)
    RNASeq_FPKM (74)
    GO_annotation: 00076357
      00076358
      00076359
      00119196
      00119197
      00119198
      00119199
    Ortholog: WBGene00037217 Caenorhabditis briggsae From_analysis (5)
      WBGene00059290 Caenorhabditis remanei From_analysis (4)
      WBGene00073608 Caenorhabditis remanei From_analysis (4)
      WBGene00158783 Caenorhabditis brenneri From_analysis (4)
      WBGene00134941 Caenorhabditis japonica From_analysis (4)
      WBGene00081072 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00226259 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g8955 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4773 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g19204 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21633 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7320 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6412 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13337 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4531 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g14055 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6669 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00362.g9761 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-T25B9.1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15045 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00190.g6648 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_14024 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014896 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08840 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g3942 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40094600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11667 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00118925 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258000 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00293772 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002640 Saccharomyces cerevisiae From_analysis (3)
      FB:FBgn0036208 Drosophila melanogaster From_analysis (8)
      ZFIN:ZDB-GENE-060518-3 Danio rerio From_analysis (9)
      HGNC:4188 Homo sapiens From_analysis (7)
      MGI:1349389 Mus musculus From_analysis (9)
      RGD:1307291 Rattus norvegicus From_analysis (9)
    Paralog: WBGene00011932 Caenorhabditis elegans From_analysis (2)
      WBGene00016020 Caenorhabditis elegans From_analysis (2)
      WBGene00018398 Caenorhabditis elegans From_analysis (2)
    Structured_description: Concise_description: T25B9.1 encodes an protein highly similar to 2-amino-3-keto-butyrate coenzyme A ligases (also called AKB ligases or glycine acetyltransferases; EC 2.3.1.29; R.W. Paper_evidence: WBPaper00004424
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable glycine C-acetyltransferase activity; pyridoxal phosphate binding activity; and transaminase activity. Predicted to be involved in biosynthetic process and threonine catabolic process. Predicted to be located in mitochondrion. Is an ortholog of human GCAT (glycine C-acetyltransferase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T25B9.1
    Corresponding_CDS_history: T25B9.1:wp109
      T25B9.1:wp268
    Corresponding_transcript: T25B9.1.1
    Other_sequence (61)
    Associated_feature: WBsf652154
      WBsf230770
  Experimental_info: RNAi_result: WBRNAi00114482 Inferred_automatically: RNAi_primary
      WBRNAi00114480 Inferred_automatically: RNAi_primary
      WBRNAi00113713 Inferred_automatically: RNAi_primary
      WBRNAi00054103 Inferred_automatically: RNAi_primary
      WBRNAi00113709 Inferred_automatically: RNAi_primary
      WBRNAi00035949 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022294
      Expr1035308
      Expr1157647
      Expr2006487
      Expr2024705
    Drives_construct: WBCnstr00030206
    Construct_product: WBCnstr00030206
    Microarray_results (18)
    Expression_cluster (189)
    Interaction (72)
  Map_info: Positive: Positive_clone: T25B9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 4.69179
  Reference: WBPaper00038491
    WBPaper00055090
  Method: Gene