WormBase Tree Display for Gene: WBGene00011855
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| WBGene00011855 | SMap | S_parent | Sequence | T20D3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-183 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | T20D3.1 | ||||||||
| Molecular_name | T20D3.1 | ||||||||
| T20D3.1.1 | |||||||||
| CE03670 | |||||||||
| Other_name | CELE_T20D3.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | clec-183 | ||||||||
| DB_info | Database | AceView | gene | 4K93 | |||||
| WormQTL | gene | WBGene00011855 | |||||||
| WormFlux | gene | WBGene00011855 | |||||||
| NDB | locus_tag | CELE_T20D3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011855|UniProtKB=O01253 | |||||||
| family | PTHR23124 | ||||||||
| NCBI | gene | 188635 | |||||||
| RefSeq | protein | NM_069238.2 | |||||||
| TREEFAM | TREEFAM_ID | TF315870 | |||||||
| TrEMBL | UniProtAcc | O01253 | |||||||
| UniProt_GCRP | UniProtAcc | O01253 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-183 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele | WBVar00931328 | ||||||||
| WBVar00931329 | |||||||||
| WBVar00931330 | |||||||||
| WBVar00931331 | |||||||||
| WBVar01500079 | |||||||||
| WBVar00431983 | |||||||||
| WBVar01498996 | |||||||||
| WBVar01498928 | |||||||||
| WBVar01500245 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (12) | |||||||||
| Paralog (70) | |||||||||
| Structured_description | Automated_description | Enriched in NSM and in male based on tiling array and RNA-seq studies. Is affected by several genes including rrf-3; eat-2; and tph-1 based on tiling array and RNA-seq studies. Is affected by six chemicals including Alovudine; stavudine; and Zidovudine based on RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T20D3.1 | |||||||
| Corresponding_transcript | T20D3.1.1 | ||||||||
| Other_sequence | CBC11880_1 | ||||||||
| Associated_feature | WBsf228815 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00035699 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018899 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053610 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025353 | ||||||||
| Expr1157168 | |||||||||
| Expr2028344 | |||||||||
| Drives_construct | WBCnstr00030333 | ||||||||
| Construct_product | WBCnstr00030333 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (45) | |||||||||
| Interaction (21) | |||||||||
| Map_info | Map | IV | Position | 4.17886 | Error | 0.003845 | |||
| Positive | Positive_clone | T20D3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
