WormBase Tree Display for Gene: WBGene00011705
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| WBGene00011705 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clp-9 | Person_evidence | WBPerson349 | |||||
| Sequence_name | T11A5.6 | ||||||||
| Molecular_name | T11A5.6a | ||||||||
| T11A5.6a.1 | |||||||||
| CE28256 | |||||||||
| T11A5.6b | |||||||||
| CE45824 | |||||||||
| T11A5.6c | |||||||||
| CE06412 | |||||||||
| T11A5.6b.1 | |||||||||
| T11A5.6c.1 | |||||||||
| T11A5.6c.2 | |||||||||
| Other_name | CELE_T11A5.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | clp-9 | ||||||||
| DB_info | Database | AceView | gene | 5K366 | |||||
| WormQTL | gene | WBGene00011705 | |||||||
| WormFlux | gene | WBGene00011705 | |||||||
| NDB | locus_tag | CELE_T11A5.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011705|UniProtKB=G5EEZ6 | |||||||
| family | PTHR10183 | ||||||||
| NCBI | gene | 266916 | |||||||
| RefSeq | protein | NM_001269221.3 | |||||||
| NM_001269223.2 | |||||||||
| NM_001383377.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF322245 | |||||||
| TrEMBL | UniProtAcc | G5ED12 | |||||||
| G5EEZ6 | |||||||||
| F1LIM7 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EEZ6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Mar 2018 11:13:03 | WBPerson1983 | Name_change | CGC_name | clp-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clp | ||||||||
| Allele (51) | |||||||||
| Strain | WBStrain00003095 | ||||||||
| WBStrain00036556 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (44) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Automated_description | Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in cytoplasm. Expressed in tail. Is an ortholog of human CAPN15 (calpain 15). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T11A5.6a | |||||||
| T11A5.6b | |||||||||
| T11A5.6c | |||||||||
| Corresponding_CDS_history | T11A5.6:wp52 | ||||||||
| Corresponding_transcript | T11A5.6a.1 | ||||||||
| T11A5.6b.1 | |||||||||
| T11A5.6c.1 | |||||||||
| T11A5.6c.2 | |||||||||
| Other_sequence | Dviv_isotig27821 | ||||||||
| JI166923.1 | |||||||||
| Associated_feature | WBsf1001006 | ||||||||
| WBsf234295 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00035464 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018581 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053097 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1924 | ||||||||
| Expr6671 | |||||||||
| Expr1019416 | |||||||||
| Expr1156702 | |||||||||
| Expr2006097 | |||||||||
| Expr2024312 | |||||||||
| Drives_construct | WBCnstr00003580 | ||||||||
| WBCnstr00030455 | |||||||||
| Construct_product | WBCnstr00030455 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (139) | |||||||||
| Interaction | WBInteraction000037286 | ||||||||
| WBInteraction000049431 | |||||||||
| WBInteraction000548496 | |||||||||
| Map_info | Map | V | Position | 2.20291 | |||||
| Positive | Positive_clone | T11A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00036482 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00047599 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
