WormBase Tree Display for Gene: WBGene00011614
expand all nodes | collapse all nodes | view schema
| WBGene00011614 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | nfya-1 | Paper_evidence | WBPaper00030771 | |||||
| Person_evidence | WBPerson716 | ||||||||
| Sequence_name | T08D10.1 | ||||||||
| Molecular_name | T08D10.1 | ||||||||
| T08D10.1.1 | |||||||||
| CE03642 | |||||||||
| Other_name | tag-295 | Person_evidence | WBPerson201 | ||||||
| CELE_T08D10.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | nfya-1 | ||||||||
| DB_info | Database | AceView | gene | XM564 | |||||
| WormQTL | gene | WBGene00011614 | |||||||
| WormFlux | gene | WBGene00011614 | |||||||
| NDB | locus_tag | CELE_T08D10.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011614|UniProtKB=G5EEG1 | |||||||
| family | PTHR12632 | ||||||||
| NCBI | gene | 181368 | |||||||
| RefSeq | protein | NM_077598.5 | |||||||
| SwissProt | UniProtAcc | G5EEG1 | |||||||
| TREEFAM | TREEFAM_ID | TF322779 | |||||||
| UniProt_GCRP | UniProtAcc | G5EEG1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Apr 2005 11:55:18 | WBPerson2970 | Name_change | CGC_name | tag-295 | ||||
| 3 | 16 Jul 2007 08:49:14 | WBPerson2970 | Name_change | CGC_name | nfya-1 | ||||
| Other_name | tag-265 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nfya | ||||||||
| Allele (43) | |||||||||
| Strain | WBStrain00035268 | ||||||||
| WBStrain00035269 | |||||||||
| WBStrain00035270 | |||||||||
| WBStrain00036046 | |||||||||
| WBStrain00008581 | |||||||||
| WBStrain00008584 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00013178 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00043056 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables DNA-binding transcription repressor activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of nematode male tail tip morphogenesis; and tissue development. Located in nucleus. Expressed in several structures, including excretory cell; gonad; head neurons; oocyte; and somatic nervous system. Used to study cancer. Is an ortholog of human NFYA (nuclear transcription factor Y subunit alpha). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:162 | Homo sapiens | Paper_evidence | WBPaper00062189 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 08 Jun 2022 00:00:00 | ||||||||
| Models_disease_asserted | WBDOannot00001237 | ||||||||
| Molecular_info | Corresponding_CDS | T08D10.1 | |||||||
| Corresponding_transcript | T08D10.1.1 | ||||||||
| Associated_feature | WBsf655710 | ||||||||
| WBsf1007143 | |||||||||
| WBsf1023951 | |||||||||
| WBsf238019 | |||||||||
| WBsf238020 | |||||||||
| WBsf238021 | |||||||||
| WBsf238022 | |||||||||
| Gene_product_binds | WBsf027928 | ||||||||
| Transcription_factor | WBTranscriptionFactor000106 | ||||||||
| WBTranscriptionFactor001158 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052856 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00115869 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116062 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035349 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018436 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (14) | |||||||||
| Drives_construct | WBCnstr00001065 | ||||||||
| WBCnstr00001090 | |||||||||
| WBCnstr00001091 | |||||||||
| WBCnstr00007047 | |||||||||
| WBCnstr00008910 | |||||||||
| WBCnstr00008912 | |||||||||
| WBCnstr00012301 | |||||||||
| WBCnstr00012805 | |||||||||
| WBCnstr00030528 | |||||||||
| WBCnstr00043042 | |||||||||
| Construct_product | WBCnstr00012301 | ||||||||
| WBCnstr00016527 | |||||||||
| WBCnstr00016798 | |||||||||
| WBCnstr00016812 | |||||||||
| WBCnstr00030528 | |||||||||
| WBCnstr00043042 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Map | X | Position | 6.75445 | Error | 0.01218 | |||
| Positive | Positive_clone | T08D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5215 | |||||||
| 5325 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
